RNA id: TU2250113


Basic Information

Item Value
RNA id TU2250113
length 226
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1968101
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26817464 ~ 26817709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCTGATGCCAAGTCGGAGGACTCGTACCCCTTTTACATTGCCCCGATTCAATCCTTTATCTTCTGCTTCGGGTCGTTCAGATGGAACTGCTAGGCTGAAGGTGAGGCTGGCTCGGTTAGAAATGGAGCaaaaagataaagagagacagatgaattTTGAACTTGAAATTAGGAGAATAGAAGCTGACAAGGAGGTGAGGATCCGACAACTGGAGCTAGACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2250043 lncRNA upstream 101379 26715872 ~ 26716085 (+) True G1968042
TU2250028 lncRNA upstream 111252 26705835 ~ 26706212 (+) True G1968028
TU2249972 lncRNA upstream 152076 26665174 ~ 26665388 (+) True G1967977
TU2249969 lncRNA upstream 153672 26663542 ~ 26663792 (+) True G1967974
TU2249967 lncRNA upstream 154226 26663009 ~ 26663238 (+) True G1967972
TU2250269 lncRNA downstream 54455 26872164 ~ 26872489 (+) True G1968246
TU2250329 lncRNA downstream 127011 26944720 ~ 26956196 (+) True G1968296
TU2250353 lncRNA downstream 167377 26985086 ~ 27002376 (+) True G1968316
TU2250360 lncRNA downstream 242695 27060404 ~ 27060903 (+) False LOC110505721
TU2250421 lncRNA downstream 300551 27118260 ~ 27122971 (+) True G1968382
XM_021583031.2 mRNA upstream 194299 26582859 ~ 26623165 (+) False LOC110504217
XM_036962948.1 mRNA upstream 194299 26596244 ~ 26623165 (+) False LOC110504217
XM_021585103.2 mRNA upstream 283405 26527650 ~ 26534059 (+) False LOC110505712
XM_021585102.2 mRNA upstream 283405 26527651 ~ 26534059 (+) True LOC110505712
XM_036962921.1 mRNA upstream 283716 26527650 ~ 26533748 (+) False LOC110505712
XM_036962834.1 mRNA downstream 84068 26901777 ~ 26904037 (+) True LOC118944312
XM_036962792.1 mRNA downstream 134431 26952140 ~ 26953607 (+) True LOC110505720
XM_021585116.2 mRNA downstream 170681 26988390 ~ 27089348 (+) False LOC110505721
XM_036962394.1 mRNA downstream 170681 26988390 ~ 27089348 (+) False LOC110505721
XM_036962395.1 mRNA downstream 170681 26988390 ~ 27089348 (+) False LOC110505721
TU2249960 other upstream 162128 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 984143 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 2025870 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 2250317 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 2455982 24361088 ~ 24361482 (+) True G1965263
TU2250364 other downstream 171130 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 254706 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 263553 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 1595891 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 2656411 29474120 ~ 29478383 (+) True G1971104

Expression Profile