RNA id: TU2251027


Basic Information

Item Value
RNA id TU2251027
length 229
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1968923
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27447010 ~ 27447238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTTACAcaactctctggtcttggccattttGGAAAGGTTGGAgactgtttgattgagtgtgtggactggtgtcttttatacaggtaacgagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaaaaaaacgaacaggtctgtgagagccggaattcttactggttggtaggtgatcaaatacttatgtcatgcaataaaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251025 lncRNA upstream 1225 27445430 ~ 27445785 (+) True G1968921
TU2250599 lncRNA upstream 88104 27358657 ~ 27358906 (+) True G1968536
TU2250484 lncRNA upstream 244313 27198818 ~ 27202697 (+) True G1968429
TU2250470 lncRNA upstream 275556 27171092 ~ 27171454 (+) True G1968416
TU2250421 lncRNA upstream 324039 27118260 ~ 27122971 (+) True G1968382
TU2251061 lncRNA downstream 23137 27470375 ~ 27470680 (+) True G1968957
TU2251079 lncRNA downstream 35536 27482774 ~ 27483104 (+) True G1968975
TU2251089 lncRNA downstream 44812 27492050 ~ 27492274 (+) True G1968985
TU2251093 lncRNA downstream 47860 27495098 ~ 27495327 (+) True G1968989
TU2251113 lncRNA downstream 62032 27509270 ~ 27509499 (+) True G1969009
XM_036962397.1 mRNA upstream 345460 27099673 ~ 27101550 (+) True LOC110505722
XM_036962396.1 mRNA upstream 347300 26988390 ~ 27099710 (+) False LOC110505721
XM_021585116.2 mRNA upstream 357662 26988390 ~ 27089348 (+) False LOC110505721
XM_021585126.2 mRNA downstream 217759 27664997 ~ 27670414 (+) True LOC110505726
XM_021585131.2 mRNA downstream 247610 27694848 ~ 27708762 (+) True calm1a
XR_005039596.1 mRNA downstream 267862 27715100 ~ 27721101 (+) False LOC118944371
XM_036962494.1 mRNA downstream 412778 27860016 ~ 27978224 (+) False LOC110505733
XM_036962492.1 mRNA downstream 412778 27860016 ~ 27979349 (+) False LOC110505733
TU2250361 other upstream 358694 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 369870 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 390343 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 791674 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 1613689 25831576 ~ 25833321 (+) True G1967032
TU2252207 other downstream 966362 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 2026882 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 2876275 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 3183090 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 3189816 30637054 ~ 30655039 (+) True G1972244

Expression Profile