RNA id: TU2251089


Basic Information

Item Value
RNA id TU2251089
length 225
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1968985
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27492050 ~ 27492274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaGCTTGAAGGAAACAattgtgttgaatgctgaactgtaatcaattaacagcattctcacataggtgttcctcttgtccagatgtgttaaGGCTGTGTGAATAGCGATGGAAATGGCATCttccgtggatctgttggagcgctaggcaaattggagtgggtccagtgtgcctggcatTCTGGCtttgatgtgggccatgaccagcctctcGAAGCAATTCAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251079 lncRNA upstream 8946 27482774 ~ 27483104 (+) True G1968975
TU2251061 lncRNA upstream 21370 27470375 ~ 27470680 (+) True G1968957
TU2251027 lncRNA upstream 44812 27447010 ~ 27447238 (+) True G1968923
TU2251025 lncRNA upstream 46265 27445430 ~ 27445785 (+) True G1968921
TU2250599 lncRNA upstream 133144 27358657 ~ 27358906 (+) True G1968536
TU2251093 lncRNA downstream 2824 27495098 ~ 27495327 (+) True G1968989
TU2251113 lncRNA downstream 16996 27509270 ~ 27509499 (+) True G1969009
TU2251149 lncRNA downstream 55718 27547992 ~ 27555033 (+) False G1969044
TU2251151 lncRNA downstream 55718 27547992 ~ 27555033 (+) True G1969044
TU2251241 lncRNA downstream 125371 27617645 ~ 27617877 (+) True G1969130
XM_036962397.1 mRNA upstream 390500 27099673 ~ 27101550 (+) True LOC110505722
XM_036962396.1 mRNA upstream 392340 26988390 ~ 27099710 (+) False LOC110505721
XM_021585116.2 mRNA upstream 402702 26988390 ~ 27089348 (+) False LOC110505721
XM_021585126.2 mRNA downstream 172723 27664997 ~ 27670414 (+) True LOC110505726
XM_021585131.2 mRNA downstream 202574 27694848 ~ 27708762 (+) True calm1a
XR_005039596.1 mRNA downstream 222826 27715100 ~ 27721101 (+) False LOC118944371
XM_036962494.1 mRNA downstream 367742 27860016 ~ 27978224 (+) False LOC110505733
XM_036962492.1 mRNA downstream 367742 27860016 ~ 27979349 (+) False LOC110505733
TU2250361 other upstream 403734 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 414910 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 435383 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 836714 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 1658729 25831576 ~ 25833321 (+) True G1967032
TU2252207 other downstream 921326 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 1981846 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 2831239 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 3138054 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 3144780 30637054 ~ 30655039 (+) True G1972244

Expression Profile