RNA id: TU2251322


Basic Information

Item Value
RNA id TU2251322
length 1596
lncRNA type antisense_over
GC content 0.38
exon number 4
gene id G1969198
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27727847 ~ 27814915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAAATAGACAAAACATGAAGTCTTTCAGAATCACCGTTTTTGTCTTTCACGTTATTGAGCTTGTGACTAACTAACTGATCTAAGGTTACAGTGACTGAAATAATAACCACATCTGATGACGTTTAGAAAAGAGGAGCTCATTTCAAACATACAGCAGGATCACCCGTTTTTGTCTTTCACGTTATTGAGCTTGTGACTAACTAACTGATCTAAGGTTACAGTGACTGAAATAATAACCACATCTGATGATGTTTAGAAAAGAGGAGCTCATTTCAAACATACAGCAGGATCACCCGTTTTTGTCTTTCACGTTATTGAGCTTGTGACTAACTAACTGATCTAAGGTTACAGTGACTGAAATAATAACCACATCTGATGATGTTTAGAAAAGAGGAGCTCATTTCAAACATACAGCAGGATCACCCGTTTTTGTCTTTCACGTTATTGAGCTTGTGACTAACTAACTGATCTAAGGTTACAGTGACTGAAATAATAACCACATCTGATGACGTTTAGAAAAGAGGAGCTCATTTCAAACATACAGCAGGATCACCCGTTTTTGTCTTTCACGTTATTGAGCTTGTGACTAACTAACTGATCTAAGGTTACAGTGACTGAAATAATAACCACATCTGATGACGTTTAGAAAAGAGGAGCTCATTTCAAACATACAGCAGGATCACCCGTTTTTGCACGGTTGCACTTTGGGATGCAGAGTAAAAGAAAGAGAACACAACCTCACGACAAGCGTGTGTGTAACTCCTCCCACACTCAGAGTGTGGGATATCATTTCAACTATAGTTTCACCATAAAATATACATCTTTCAAGTGATTGTGCCATTCTTTAACCAGTTTTCATCATGAGCAAATAACCACTAGCCTTCAAAGCACGCAAATGTACAAACTTACATACAAACAagcatatatacagttgaagtcggaagtttacctacacttaggttggagtcattaaaactaatttttcaaccactccacaaatttcttgttaaccaacaatagttttggcaagtcagtcaggacatctactttgtgcatgacaagtcatttttacaacaattgtttacagattatttcacttatttcacctatttcactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtgctgttaaacagcttggaaaattccagaaaattatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaactggatgtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagcaaagaccccGGAAAAATattgaagacctccacaagtctggttcatccctgggagcaatttccaaacgcctgaaggtaccacattcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacacaaccgtcataccactcaggaaggagacacattctgtctcctagagatgaacatactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctgtagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251310 lncRNA upstream 6750 27715016 ~ 27721097 (+) True LOC118944371
TU2251295 lncRNA upstream 36656 27690629 ~ 27691191 (+) True G1969177
TU2251242 lncRNA upstream 108746 27618853 ~ 27619101 (+) True G1969131
TU2251241 lncRNA upstream 109970 27617645 ~ 27617877 (+) True G1969130
TU2251149 lncRNA upstream 172814 27547992 ~ 27555033 (+) False G1969044
TU2251418 lncRNA downstream 41367 27856282 ~ 27856719 (+) True G1969276
TU2251502 lncRNA downstream 196946 28011861 ~ 28014274 (+) False G1969356
TU2251503 lncRNA downstream 196946 28011861 ~ 28012680 (+) True G1969356
TU2251516 lncRNA downstream 222113 28037028 ~ 28037245 (+) True G1969369
TU2251399 lncRNA downstream 246961 28061876 ~ 28065667 (+) True LOC110505741
XR_005039596.1 mRNA upstream 6746 27715100 ~ 27721101 (+) False LOC118944371
XM_021585131.2 mRNA upstream 19085 27694848 ~ 27708762 (+) True calm1a
XM_021585126.2 mRNA upstream 57433 27664997 ~ 27670414 (+) True LOC110505726
XM_036962397.1 mRNA upstream 626297 27099673 ~ 27101550 (+) True LOC110505722
XM_036962396.1 mRNA upstream 628137 26988390 ~ 27099710 (+) False LOC110505721
XM_036962494.1 mRNA downstream 45101 27860016 ~ 27978224 (+) False LOC110505733
XM_036962492.1 mRNA downstream 45101 27860016 ~ 27979349 (+) False LOC110505733
XM_036962491.1 mRNA downstream 45101 27860016 ~ 27980132 (+) False LOC110505733
XM_036962489.1 mRNA downstream 45101 27860016 ~ 27980643 (+) False LOC110505733
XM_036962485.1 mRNA downstream 45101 27860016 ~ 27980644 (+) False LOC110505733
TU2250361 other upstream 639531 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 650707 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 671180 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 1072511 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 1894526 25831576 ~ 25833321 (+) True G1967032
TU2252207 other downstream 598685 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 1659205 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 2508598 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 2815413 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 2822139 30637054 ~ 30655039 (+) True G1972244

Expression Profile