RNA id: TU2251878


Basic Information

Item Value
RNA id TU2251878
length 504
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1969686
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28030213 ~ 28030716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgaacaattgggcgtgcaaaattattcagctcccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagaacatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatgtgtttatttttcaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251875 lncRNA downstream 1567 28028323 ~ 28028646 (-) True G1969683
TU2251870 lncRNA downstream 10018 28019975 ~ 28020195 (-) True G1969678
TU2251845 lncRNA downstream 18472 28011542 ~ 28011741 (-) True G1969662
TU2251791 lncRNA downstream 107954 27921305 ~ 27922259 (-) True G1969617
TU2251757 lncRNA downstream 145036 27883994 ~ 27885177 (-) True G1969587
TU2251885 lncRNA upstream 23373 28054089 ~ 28054386 (-) True G1969692
TU2251887 lncRNA upstream 26789 28057505 ~ 28057723 (-) True G1969694
TU2251888 lncRNA upstream 27522 28058238 ~ 28058742 (-) True G1969695
TU2251860 lncRNA upstream 29152 28059868 ~ 28060516 (-) True G1969668
TU2251862 lncRNA upstream 30909 28061625 ~ 28064306 (-) True G1969670
XM_021585139.2 mRNA downstream 15900 28011861 ~ 28014313 (-) True LOC110505736
XM_021585137.2 mRNA downstream 41262 27985550 ~ 27988951 (-) True LOC110505734
XM_021585135.2 mRNA downstream 171614 27854619 ~ 27858599 (-) True brms1la
XM_036962931.1 mRNA downstream 175753 27732149 ~ 27854460 (-) True LOC110505731
XM_021585127.2 mRNA downstream 337638 27676570 ~ 27692575 (-) True nrde2
XM_021585143.2 mRNA upstream 20272 28050988 ~ 28053517 (-) True fam177a1
XM_036963135.1 mRNA upstream 35384 28066100 ~ 28087041 (-) False ctage5
XM_036963136.1 mRNA upstream 35384 28066100 ~ 28087669 (-) False ctage5
XM_036963133.1 mRNA upstream 35384 28066100 ~ 28094233 (-) False ctage5
XM_036963134.1 mRNA upstream 35384 28066100 ~ 28094233 (-) False ctage5
TU2250152 other downstream 1264842 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 1491505 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 4601569 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 4807710 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 4862100 23165032 ~ 23168113 (-) True G1964564
TU2251892 other upstream 69205 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 112722 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 827224 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 1492044 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 1951568 29982284 ~ 29982900 (-) True G1972454

Expression Profile