RNA id: TU2251888


Basic Information

Item Value
RNA id TU2251888
length 505
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G1969695
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28058238 ~ 28058742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCGAATACATCCGAGGACACACAACACCTGGTCCAAATAGGTGATAATTGCCTCTTTCCAGCGGCCAGGGAACTGAGGGTCGCTTTCGACAGATTCCATCCTGCCCTCCACGCCATTCAATGGCCTTAGATATCCTTCAACTGGGGCAAACTCGAGCTGTAGCTCGCGCACGAAGGAGCCAAACTTCCTCATGAGAAAGTCTAATCTTGGGGTCTGTTCGGAGCCATAGCCTCCCCCATTCGAGCCACCTCCGACACGCAACTTGAGCTCCATCCAAAGCGATGGGTAAAACAGACACTCCCTCCAGCGAGAGCACACGGACGAGGCCCGAAGCTTGTCACGGTCGGACAAGAATGAAAATATGTGGACGATAAGCTCGCTTGGTAAAGCCATGGCTCCAACACCCCCGCACAGAGCCATGGCGCAGGCCACTAAACTATTATTCGCAAACAAAAGTGTAAATATAACCGTTGTAAGATTGTGCGACAACGGTACTGTTCCG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251887 lncRNA downstream 515 28057505 ~ 28057723 (-) True G1969694
TU2251885 lncRNA downstream 3852 28054089 ~ 28054386 (-) True G1969692
TU2251878 lncRNA downstream 27522 28030213 ~ 28030716 (-) True G1969686
TU2251875 lncRNA downstream 29592 28028323 ~ 28028646 (-) True G1969683
TU2251870 lncRNA downstream 38043 28019975 ~ 28020195 (-) True G1969678
TU2251860 lncRNA upstream 1126 28059868 ~ 28060516 (-) True G1969668
TU2251862 lncRNA upstream 2883 28061625 ~ 28064306 (-) True G1969670
TU2251896 lncRNA upstream 49920 28108662 ~ 28109006 (-) True G1969703
TU2251902 lncRNA upstream 58118 28116860 ~ 28117211 (-) True G1969709
TU2251903 lncRNA upstream 59742 28118484 ~ 28118699 (-) True G1969710
XM_021585143.2 mRNA downstream 4721 28050988 ~ 28053517 (-) True fam177a1
LOC110504219 mRNA downstream 18213 28014417 ~ 28040025 (-) True LOC110504219
XM_021585139.2 mRNA downstream 43925 28011861 ~ 28014313 (-) True LOC110505736
XM_021585137.2 mRNA downstream 69287 27985550 ~ 27988951 (-) True LOC110505734
XM_021585135.2 mRNA downstream 199639 27854619 ~ 27858599 (-) True brms1la
XM_036963135.1 mRNA upstream 7358 28066100 ~ 28087041 (-) False ctage5
XM_036963136.1 mRNA upstream 7358 28066100 ~ 28087669 (-) False ctage5
XM_036963133.1 mRNA upstream 7358 28066100 ~ 28094233 (-) False ctage5
XM_036963134.1 mRNA upstream 7358 28066100 ~ 28094233 (-) False ctage5
XM_036963130.1 mRNA upstream 7358 28066100 ~ 28094234 (-) False ctage5
TU2250152 other downstream 1292867 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 1519530 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 4629594 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 4835735 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 4890125 23165032 ~ 23168113 (-) True G1964564
TU2251892 other upstream 41179 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 84696 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 799198 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 1464018 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 1923542 29982284 ~ 29982900 (-) True G1972454

Expression Profile