RNA id: TU2251907


Basic Information

Item Value
RNA id TU2251907
length 838
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1969714
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28121720 ~ 28122557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatagactgcatccaatttgctgagtagagtgttggaggctattttgtaaatgacattgctgaagacaaggatttatttatttatttcacctttatttaaccaggtaggctcgttgagaacaagttctcatttacaactgcgacctggccaagataaagcatagcagtgtgaacagacaacaacacagagttacacatggagtaaacaataaccatgtcaataacacagtagaaaaaaaaggcaTGAGGAGGATCAGTAgatagttttacgagggtatgttaggcagcatgactgaaggaggctttgtttcgAAGTAGgaggccgattctagatttcattttggattgaagatgcagtctaaccagacacctaggtatttgtagttgtccacatattctaagtcagaaccatccagagtagagatgctacagtgccttgcgaaagtattcggcccccttaaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaattatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtctgttaaaagcgcagagagcatcatgaagaacaaggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2251906 lncRNA downstream 116 28121290 ~ 28121604 (-) True G1969713
TU2251905 lncRNA downstream 653 28120812 ~ 28121067 (-) True G1969712
TU2251903 lncRNA downstream 3021 28118484 ~ 28118699 (-) True G1969710
TU2251902 lncRNA downstream 4509 28116860 ~ 28117211 (-) True G1969709
TU2251896 lncRNA downstream 12714 28108662 ~ 28109006 (-) True G1969703
TU2251922 lncRNA upstream 26960 28149517 ~ 28149735 (-) True G1969729
TU2251947 lncRNA upstream 57578 28180135 ~ 28180370 (-) True G1969754
TU2251968 lncRNA upstream 80152 28202709 ~ 28245974 (-) True G1969772
TU2252075 lncRNA upstream 155774 28278331 ~ 28278536 (-) True G1969874
TU2252083 lncRNA upstream 170429 28292986 ~ 28293351 (-) True G1969881
XM_021585144.2 mRNA downstream 27485 28066100 ~ 28094235 (-) True ctage5
XM_036963130.1 mRNA downstream 27486 28066100 ~ 28094234 (-) False ctage5
XM_036963131.1 mRNA downstream 27486 28066100 ~ 28094234 (-) False ctage5
XM_036963132.1 mRNA downstream 27486 28066100 ~ 28094234 (-) False ctage5
XM_036963134.1 mRNA downstream 27487 28066100 ~ 28094233 (-) False ctage5
XM_021585158.2 mRNA upstream 991058 29113615 ~ 29122177 (-) False LOC110505745
XM_036962820.1 mRNA upstream 991058 29113615 ~ 29122177 (-) False LOC110505745
XM_036962821.1 mRNA upstream 991058 29113615 ~ 29122177 (-) True LOC110505745
XM_036962824.1 mRNA upstream 1012804 29135361 ~ 29169633 (-) False daam1a
XM_036962822.1 mRNA upstream 1012804 29135361 ~ 29191453 (-) False daam1a
TU2251892 other downstream 20284 28099921 ~ 28101436 (-) True G1969699
TU2250152 other downstream 1356349 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 1583012 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 4693076 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 4899217 23221973 ~ 23222503 (-) True G1964592
TU2251917 other upstream 20881 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 735383 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 1400203 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 1859727 29982284 ~ 29982900 (-) True G1972454
TU2255230 other upstream 2384994 30507551 ~ 30508058 (-) True G1972746

Expression Profile