RNA id: TU2253384


Basic Information

Item Value
RNA id TU2253384
length 3912
RNA type TUCP
GC content 0.45
exon number 2
gene id G1971104
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29474120 ~ 29478383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccatctctctttctccactcctccgtctctccccctctcttgcaCCCCTCCTACTTCCTCTCAGATTTTAACAGGGTCCTCTGACATTAGGGAGGTGGTGGCTCTGCTTCAGAAATAGGACCTGCTGAAGACCCAGATCTCTGGTCATGGAGAGACTCTGAGTGCCGTCAGTAACATTGTCTTAATGGGGACGCACAGAGACTCACTGCAGATCCAGACCCGGGTCAAATCACTCAGTGCTCAGTACAGCTCTTTGGTGGCACTTAGTAAGAACAGGAGGAAACTGCTGGAGGGCCAGTTGAAGCTGTTTGAGTTTTTTGACGACtgtgaggaggtggaggtgtgGATTTATGAGAAGTGGCTTCCTCTGTAGTGTGCCAGGCTGAGAAGAGACTTCAGCCAGATCCAGCTGGATTTTCAGAAACAGGTAAGACATTGTCTACGTCACAAATAGCACACTATtccccatagtgcactacatttgaccagggtcctggtgaaaagtagtgcactatcttgagaataggatgctatttgggtCAGACCTTCTTCAGTCACACAAACATTGATTATTAGCAATCAATAAAAAACTTAAATCCATGGGCATAACAAATAAATAGGCATAGGCCTGTCGAAATACACTGGTATTTACAGTATAAACGGATGAAAAAAAAGTAATATCTTAATGTGAAACAAACACTCAACTCACATATTTATATGTGTTTGTTGACCTACCGAGGTGCTGTACCATCAGTCTCTGTGCTCGGGGGTCATCAGTAGAGGTCTGGAGATGTGCCGAGGGAAACACCCCAGTTAGAAGGACATCCAGAAGTCGGAAGTTAGTCCTGACCCTCAAACAGCAGTGGGAACACCTGAAGGACGAAGTGGCCAATTGCAAAAACAGACTGCATACAACCATTGTCATCAAACAAGTTACAACCATTAAAAACATGCACAAATAAAAGTCACAGAAATAGAAAGTTTGACAGAAGGATTATATGTAGGGAGAATGTATGGAATATGTCTAACTTAGCTAGTACAGTGCCATTATTTTATCCACAGAATTActgggccttcagaaagtatgcagaccgtttgactttttctacattttgtttgatttaataaatacaaaatcttCAGCAATCTGTACAAAATACCTtctaatgacaaagcgaaaacaggtttttagaaatctttgcaaatgtatttaaaatgaaatatcacatttacataactattcagacccaaAAATTGccgactcaaaattgagcttaggtgcatcttgtttcaattgatcatccttgaggtgtttctacaactagattggagtccacttgcggtagattcaattgattggacatgatttggaaaggcacacacctgtctatataagttcccacagttgacagtgcatgtcagagaaaacaccaagccatgaggtcaaaggaattgtccgtagagctccgagacaggattgtgtcgaggcacagatctggggaagggtaccaaaacatttctgaagcattgaaggtcctcaagaacacagtggcctccatcaatatgaaatggaagaagtttggaaccatcaagactcttcctagagctggccgcccagccaaactgagcaatctggggagaagggccttggtcagggaggtgaccaagaacccaatggtcactatgacagtgctctagagttcctctgtagagatgggagaaccttccagaaccatctctgcagcactccaccaatcaggcctttatggtagagtggcaaaacagaagccactcctcagtaaaagacacatgagaGCCTGCTTGttttttggagtttgccaaaaggcacctaaagactctcagactctcagaccatgagaaacattcagaaggccgctgggccagacggattactaggacgtgtactccgagcatgcgctgaccaactggcaagtgtcttcactgacattttcaacctgtccctgactgagtctataataccaacatgtttcaagcagaccaccataatccctgtgcccaagaacaccaaggtaacctgcctaaatgactactgatccgtagcactcacgtttgtagccatgaaatgctttgaaaggctggtcatggctcacatcaacaccattatcccagaaaccctagacccacaccaatttacataccgcaccaacagatccacagatgatgccatctctattgcactccacactgccctttcccacctggacaaaaggaacacctacgtgagaatgctattcattgactacagctcagcgttcaacaccatagtgccctcaaagctcatcactgagcTAAGGACCCGGctactaaacaccttcctctgcaactgtatcctggacttcatgacgggccaccaccaggtggtaagggtaggtaacaacacaaccgccaagctgatcctcaacacggggtcccctcaggggtgcatgctcagtcccctcctgtactacctgttcactcatgactgcatggccaagcatgactccaacaccatcattaagtattaagcctgatcactgacaacgatgagacagcctatagggaggaggtcagagaccgagcagtgtagtgccaggataacaacctctccctcaacgggatcaagacaaaggagactacagaaaaaggaggaccgggcacgcccccattctcatcgacagggctgtagtggagcaggttgagatcttcaagttccttggtgtccacatccccaacaaactatcatggtccaaacacaccaagacagtcatgaatagggcatgacaaagcctattccccctcaggagactgaaaagatttggcatgggtcctcagatcctcaaaaagttatacagctgcaccatcgagagcatcctgactggttccATCACcccctggaatggcaactgctcagcctccgactgtaaggcactacagagggtagtgtgtatggcccagtacattactggggccaagcttcctgccatccaggacctctataccaggcggtgtctacccccaagccatactcCTGATCAGCTAATCAAATGGCgaaccagactatttacattgcccacCCACccatcttttacgctgctgctactttgTTTATGAATGATGCATAGTCACTTGAACTCTACCTACCTCTGCCCTCGAACATTAACTatttaccagtaccccctgtatatagcctcgctattgttattttactgatgctctttaattattttttacttttataaaaaaaaatttaacctatttttcataaaactgtattgttgttttgggcttgtaagtaagcatttcactgtaaggtacacctgttgtattcggcgcatgtgattaaTTTTTTTGATTTGATACGGTACCACAAACTGTTAGCGCCTACATAAAGCTGTGCCAAcaacacttagtattactttcttagctacagtatacatatctccctggcatattacataatttatgcaggaGCATACAATACATATTTGGATTCAACTTGTTgtactgtgctcacttgaacaggaaggtggcgcggcggtccttcgtgggcaaattttgtcatcaaactttgtcatcaaagtctggcattctctggatttgtggtgctttcaagacaactaggaacttggaaaaaaaacaaggtttaatcatgatgacgtcagtgatcttcaggccgTACCCCtggaaagaggccagagttcccgaccTACAATTtcaagttggatgaccattcaaaacgtattttcttagtcggagcttgttttttccccgagttcccagttgtcttgaactcactgaaatcagatttcccagttccgagatAACAGTTGTTtggattgacagcatggacaatgttgaatgtttataattttttaagcttggaaaagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253357 lncRNA upstream 159817 29313881 ~ 29314303 (+) True G1971091
TU2253354 lncRNA upstream 163471 29310153 ~ 29310649 (+) True G1971088
TU2253338 lncRNA upstream 184284 29283882 ~ 29289836 (+) True G1971073
TU2253336 lncRNA upstream 192033 29281884 ~ 29282087 (+) True G1971071
TU2253331 lncRNA upstream 197389 29276108 ~ 29276731 (+) True G1971066
TU2253704 lncRNA downstream 43939 29522322 ~ 29522574 (+) True G1971354
TU2253715 lncRNA downstream 51791 29530174 ~ 29530374 (+) True G1971365
TU2253726 lncRNA downstream 58886 29537269 ~ 29537535 (+) True G1971376
TU2253730 lncRNA downstream 60684 29539067 ~ 29539326 (+) True G1971380
TU2253739 lncRNA downstream 66693 29545076 ~ 29545490 (+) True G1971389
XM_021585192.2 mRNA upstream 22498 29408807 ~ 29451622 (+) True LOC110505763
XM_021585191.2 mRNA upstream 68513 29392556 ~ 29405607 (+) True LOC110505762
XM_036963068.1 mRNA upstream 82022 29381713 ~ 29392098 (+) False LOC110505760
XM_021585187.2 mRNA upstream 82022 29381729 ~ 29392098 (+) False LOC110505760
XM_021585188.2 mRNA upstream 82022 29381733 ~ 29392098 (+) True LOC110505760
XM_021585193.2 mRNA downstream 44307 29522690 ~ 29525076 (+) True LOC110505764
XM_021585195.2 mRNA downstream 381265 29859648 ~ 29886359 (+) False LOC110505766
XM_021585196.2 mRNA downstream 382032 29860415 ~ 29886008 (+) True LOC110505766
XM_021585197.2 mRNA downstream 410334 29888717 ~ 29906400 (+) True LOC110505767
XR_002470865.2 mRNA downstream 461696 29940079 ~ 29941170 (+) True LOC110505772
TU2252207 other upstream 1060201 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2385804 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2396980 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2417453 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 2818784 26654905 ~ 26655336 (+) True G1967965
TU2254300 other downstream 845130 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 1151945 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 1158671 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 1181021 30659404 ~ 30679995 (+) True G1972245
TU2254670 other downstream 1216850 30695233 ~ 30696314 (+) True G1972252

Expression Profile