RNA id: TU2255337



Basic Information


Item Value
RNA id TU2255337
length 222
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1972813
representative True

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30686862 ~ 30687083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAGTGCGCTATAAATCACAGCGGAGACAAACTTCTGGGGGAGAAATGTGTTACATTAAAATGGGATTCTAAAgtcatttatttaaaaatatttCTGGCTGCTTTGACTGAGTAACGTACCTTTTGTTGTGGTGTGCAGTGGGAGTGGGGAGTAGGAGCAGATCCTACAGTGTTAGGTTGATCTTGTTGGCAGGCCCTGAACTCTAACCCCTGGcatcacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2255315 lncRNA downstream 3459 30617366 ~ 30683403 (-) False G1972810
TU2255330 lncRNA downstream 3459 30630139 ~ 30683403 (-) False G1972810
TU2255318 lncRNA downstream 3459 30633966 ~ 30683403 (-) True G1972810
TU2255311 lncRNA downstream 5274 30626089 ~ 30681588 (-) False G1972810
TU2255314 lncRNA downstream 5274 30630487 ~ 30681588 (-) False G1972810
TU2255338 lncRNA upstream 3732 30690815 ~ 30691131 (-) True G1972814
TU2255341 lncRNA upstream 9506 30696589 ~ 30696915 (-) True G1972817
TU2255343 lncRNA upstream 15123 30702206 ~ 30703547 (-) True G1972818
TU2255349 lncRNA upstream 32391 30719474 ~ 30719679 (-) True G1972824
TU2255350 lncRNA upstream 33905 30720988 ~ 30721254 (-) True G1972825
LOC110504221 mRNA downstream 690183 29993757 ~ 29996679 (-) True LOC110504221
XM_021585204.2 mRNA downstream 707337 29942119 ~ 29979525 (-) True LOC110505770
XM_021585199.2 mRNA downstream 707338 29942119 ~ 29979524 (-) False LOC110505770
XM_021585201.2 mRNA downstream 707339 29942119 ~ 29979523 (-) False LOC110505770
XM_021585211.2 mRNA upstream 169967 30857050 ~ 30870523 (-) False LOC110505778
XM_021585210.2 mRNA upstream 169967 30857050 ~ 30872023 (-) True LOC110505778
NM_001165152.2 mRNA upstream 188311 30875394 ~ 30880153 (-) False sptssa
XM_021585214.2 mRNA upstream 193551 30880634 ~ 30891844 (-) False LOC110505780
XM_021585216.2 mRNA upstream 193551 30880634 ~ 30891854 (-) False LOC110505780
TU2255302 other downstream 3459 30626089 ~ 30683403 (-) False G1972810
TU2255303 other downstream 3459 30628261 ~ 30683403 (-) False G1972810
TU2255304 other downstream 11347 30616588 ~ 30675515 (-) False G1972810
TU2255230 other downstream 178804 30507551 ~ 30508058 (-) True G1972746
TU2254903 other downstream 703962 29982284 ~ 29982900 (-) True G1972454
TU2255376 other upstream 77873 30764956 ~ 30765933 (-) True G1972851
TU2256456 other upstream 897457 31584540 ~ 31585046 (-) True G1973793
TU2256505 other upstream 927338 31614421 ~ 31618499 (-) True G1973835
TU2256690 other upstream 1299360 31986443 ~ 31986884 (-) True G1974000
TU2258248 other upstream 2632646 33319729 ~ 33324325 (-) True G1975453

Expression Profile