RNA id: TU2255665


Basic Information

Item Value
RNA id TU2255665
length 1656
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1973082
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31107160 ~ 31108981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACATCAAAAAAACAGAGAAAGACAAAACGCTGACATTAAGCTGCACATAATCACCCATTTTCTGGTTTGAAAAATACCACAAAAAAGACTGGAATTTTGCTGTAGCCTATAAagaataacattttatttataaTTCATTTCCACTTGGAATTTAAGATTGTATcattcaTGCAAATTGTAACACATGGACATATTCATTGTGGGGACTACAAGTTTTGGGAATACAACATTATTTTACAAGCTCGAAATTGTTTTAAATACACTAGCAATGATTTACAGCTGGATATACAATCATTCAATTGGAAACACTTTACAGGACTATTGTATTTTACTCATACATATTGTTATACATTGAAGTAACAGTCCTTATGCACCAGGTGCATGCAAAAATAAGATAAATGTTTTCTGTTTGTCCTTTTGTCGAGCACTATAAAAATGAGAAGATACTAAGAAGTGTTGAGGACCGGTCTGGAATACACACCTTGATAGTATGACGCCTCTATTGCGGATGGGTCCATGGCTCTGCCTACCATGGACGCGCTGCCGAGGGGTAGACTGGAGGACATACTTGAGCCGTAGGAGGAGTATTGCAAAGCTTGCTCGTAGGCTTTCAAGTCCAGTTTGTGCTGTTGCTCTGAAGATGACATTAAATTATTTATTGAAAAGGGGTGGTTGAATGAGTAATGGGGATCCCCTTTTAGGTGCAGCTGGGACTCGTGCGCCATTGAGTGCggaggtaaagggagagaggacagggacgTGACGGAGCTGGCCACAGGGTGGAGAGGTGGCCCGCTGCTCTTTAGTTCAGAGGCGCTGCTACTGCTCCTGCGGTCCATTATGTGAGGGCTGGAGGACTGGTTGCAGGTGGAGAGGGAGTTGGGGTCCACATGTCCAGTCTTGCTGTTGTCGCTCGAAGGTGACCCAGAACCAGACTGGTCTTTCCTTCCGTCTCCTTTACTTGAAGATAGCTTTCTATTTTCGCATTTAAAGCGCTTTTGTCTGCGGAGATAACAACCGTTCTCGAACATATTTCCAGAATCTGGGTGCAGGGCCCAGTATGAGCCTTTGCCTGGTTTATCCGGTGATCTAGACACTTTGATGAAACAATCATTAAAAGACAAGGAATGGCGAATAGAGTTCTGCCACCTCTGTTGGTTCTGTCTGTAGTATGGAAATAGGTCCATTATCCATTGGTAGATTTCGCTAAGCGTGAGCATCTTGCTTGGTGCTTGCTGAATGGCCATGGTTATCAGGGATATGTATGAATACGGAGGCTTTGCGTGCGGGTAGCTTCTCCTGAACGACTTGTTGTCCCTTGCTCGGTTCAGGTTGGGCTGATTATAGGACATTTGGCTCATTGTAGGGCTCATGCTGGCGTATGGATTCAGAGCGTTCATGGAAGCCTGCTGAGCCGACATTGCGCCCATGTTCGAGGGGCTAAGGGCAGTGCCCATTGACGATACCCCGCCGCACATTCCATTCATGGACGTGCTCGGAGGCATCCCTGCCATTGTACCGGGGCTTATTCCGGCTCCCAGGCCGGGGTTCGCGTAGGACATGTTGAAAGAACCGGAGGTCATATTTCCACTGGTAGACATACTCATGTAACTGTTCATACTATTCATGGAACCCAGTCCTGCATTCATGCCGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2255555 lncRNA downstream 42377 31064494 ~ 31064783 (-) True G1972999
TU2255529 lncRNA downstream 61301 31045571 ~ 31045859 (-) True G1972973
TU2255523 lncRNA downstream 64595 31042363 ~ 31042565 (-) True G1972967
TU2255487 lncRNA downstream 79038 30996765 ~ 31028122 (-) True G1972937
TU2255479 lncRNA downstream 139119 30967758 ~ 30968041 (-) True G1972932
TU2255700 lncRNA upstream 43972 31152953 ~ 31153306 (-) True G1973117
TU2255703 lncRNA upstream 45038 31154019 ~ 31154258 (-) True G1973120
TU2255710 lncRNA upstream 48428 31157409 ~ 31157639 (-) True G1973127
TU2255871 lncRNA upstream 93090 31202071 ~ 31202413 (-) True G1973279
TU2255873 lncRNA upstream 97473 31206454 ~ 31206766 (-) True G1973281
XM_021585222.2 mRNA downstream 17862 31087360 ~ 31089298 (-) True LOC110505787
XM_021585219.2 mRNA downstream 115071 30986765 ~ 30992089 (-) True LOC110505783
XM_036962343.1 mRNA downstream 121396 30913042 ~ 30985764 (-) False LOC110505782
XM_036962347.1 mRNA downstream 121396 30913042 ~ 30985764 (-) True LOC110505782
XM_036962345.1 mRNA downstream 121400 30913042 ~ 30985760 (-) False LOC110505782
XR_002470590.2 mRNA upstream 5887 31114868 ~ 31148068 (-) True LOC110504336
LOC110505792 mRNA upstream 163068 31272049 ~ 31273966 (-) False LOC110505792
XM_021585245.2 mRNA upstream 513061 31622042 ~ 31630448 (-) False LOC110505798
XM_021585246.2 mRNA upstream 514572 31623553 ~ 31630084 (-) False LOC110505798
XM_021585247.2 mRNA upstream 514572 31623553 ~ 31632417 (-) True LOC110505798
TU2255376 other downstream 341227 30764956 ~ 30765933 (-) True G1972851
TU2255302 other downstream 423757 30626089 ~ 30683403 (-) False G1972810
TU2255303 other downstream 423757 30628261 ~ 30683403 (-) False G1972810
TU2255304 other downstream 431645 30616588 ~ 30675515 (-) False G1972810
TU2255230 other downstream 599102 30507551 ~ 30508058 (-) True G1972746
TU2256456 other upstream 475559 31584540 ~ 31585046 (-) True G1973793
TU2256505 other upstream 505440 31614421 ~ 31618499 (-) True G1973835
TU2256690 other upstream 877462 31986443 ~ 31986884 (-) True G1974000
TU2258248 other upstream 2210748 33319729 ~ 33324325 (-) True G1975453
TU2258576 other upstream 2447449 33556430 ~ 33556811 (-) True G1975763

Expression Profile