RNA id: TU2255709



Basic Information


Item Value
RNA id TU2255709
length 219
RNA type TUCP
GC content 0.58
exon number 1
gene id G1973126
representative True

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31157518 ~ 31157736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggcgtgcatgaccacgcagtcatgggtgaacagggagtacaggagagggctgagaacgcacccttgtgggaccccagtgttgaggatcagcggggtggagatgttacctaccctaTCCACCTGGTgacagcccatcaggaagtccaggacccagttgtacagtccggggtcgagacccagggtctcgagcttaatgacaagtttggagggtactatgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2255701 lncRNA upstream 3659 31153587 ~ 31153859 (+) True G1973118
TU2255690 lncRNA upstream 7951 31149367 ~ 31149567 (+) True G1973107
TU2255541 lncRNA upstream 101592 31055513 ~ 31055926 (+) True G1972985
TU2255526 lncRNA upstream 112893 31044369 ~ 31044625 (+) True G1972970
TU2255525 lncRNA upstream 113340 31043891 ~ 31044178 (+) True G1972969
TU2255723 lncRNA downstream 7977 31165713 ~ 31165945 (+) True G1973140
TU2255740 lncRNA downstream 19144 31176880 ~ 31177158 (+) True G1973157
TU2255743 lncRNA downstream 20807 31178543 ~ 31178762 (+) True G1973160
TU2255753 lncRNA downstream 27813 31185549 ~ 31185941 (+) True G1973170
TU2255765 lncRNA downstream 33924 31191660 ~ 31191940 (+) True G1973182
XM_021585223.2 mRNA upstream 48492 31103284 ~ 31109026 (+) True LOC110505788
XM_036962802.1 mRNA upstream 74977 31080679 ~ 31082541 (+) True LOC118944303
XM_021585220.2 mRNA upstream 116698 31000516 ~ 31040820 (+) True LOC110505784
XM_021585221.2 mRNA upstream 157125 30992299 ~ 31000393 (+) False LOC110505785
XM_036963008.1 mRNA upstream 157125 30992312 ~ 31000393 (+) True LOC110505785
XM_021585224.2 mRNA downstream 57087 31214823 ~ 31220599 (+) False LOC110505789
XM_021585226.2 mRNA downstream 57087 31214823 ~ 31220599 (+) True LOC110505789
XM_036962213.1 mRNA downstream 63756 31221492 ~ 31271457 (+) False LOC110505790
XM_021585230.2 mRNA downstream 64076 31221812 ~ 31271457 (+) False LOC110505790
XM_021585232.2 mRNA downstream 64279 31222015 ~ 31271457 (+) False LOC110505790
TU2254670 other upstream 461204 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 477523 30659404 ~ 30679995 (+) True G1972245
TU2254661 other upstream 502479 30637054 ~ 30655039 (+) True G1972244
TU2254659 other upstream 524851 30630328 ~ 30632667 (+) True G1972242
TU2254300 other upstream 827081 30323513 ~ 30330437 (+) True LOC110505775
TU2255776 other downstream 45879 31203615 ~ 31203991 (+) True G1973193
TU2255965 other downstream 229742 31387478 ~ 31387736 (+) True G1973369
TU2256257 other downstream 560788 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 629509 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 722374 31880110 ~ 31880820 (+) True G1973717

Expression Profile