RNA id: TU2255985



Basic Information


Item Value
RNA id TU2255985
length 207
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1973389
representative True

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31416739 ~ 31416945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgtaaaccagggctctggtcaaaagtagtgcactatatagggaatagggtgccatttaggacgcacACCTGTCTAACTATTCGATCAAAACTGcaatatacactcagtggccatcCAGTACTGAGTCGGATACCCCTTTGCCTCCAAAACAGCCTGAATCAAAGGACCTAAcctgtgccaggaaaacattccccacaccattataC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2255979 lncRNA upstream 11696 31404811 ~ 31405043 (+) True G1973383
TU2255978 lncRNA upstream 11972 31404559 ~ 31404767 (+) True G1973382
TU2255977 lncRNA upstream 12712 31403775 ~ 31404027 (+) True G1973381
TU2255976 lncRNA upstream 13319 31403221 ~ 31403420 (+) True G1973380
TU2255975 lncRNA upstream 14071 31402439 ~ 31402668 (+) True G1973379
TU2255986 lncRNA downstream 1555 31418500 ~ 31418699 (+) True G1973390
TU2255989 lncRNA downstream 7390 31424335 ~ 31424634 (+) True G1973393
TU2255990 lncRNA downstream 7857 31424802 ~ 31425161 (+) True G1973394
TU2255993 lncRNA downstream 11502 31428447 ~ 31432564 (+) True G1973397
TU2256060 lncRNA downstream 43656 31460601 ~ 31460879 (+) True G1973458
XM_021585233.2 mRNA upstream 125753 31287902 ~ 31290986 (+) True LOC110505791
XR_002470871.2 mRNA upstream 134631 31274668 ~ 31282108 (+) False LOC110505794
XM_021585227.2 mRNA upstream 145282 31222018 ~ 31271457 (+) False LOC110505790
XM_021585234.2 mRNA downstream 29966 31446911 ~ 31459466 (+) True LOC110505795
XM_036963033.1 mRNA downstream 159538 31576483 ~ 31587632 (+) False LOC110505796
XM_021585238.2 mRNA downstream 160250 31577195 ~ 31587632 (+) False LOC110505796
XM_036963034.1 mRNA downstream 160250 31577195 ~ 31587632 (+) False LOC110505796
XM_021585237.2 mRNA downstream 160251 31577196 ~ 31587632 (+) True LOC110505796
TU2255965 other upstream 29003 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 212748 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 259003 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 720425 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 736744 30659404 ~ 30679995 (+) True G1972245
TU2256257 other downstream 301579 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 370300 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 463165 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 477038 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other downstream 477038 31893983 ~ 31909469 (+) True LOC110505805

Expression Profile