RNA id: TU2256507



Basic Information


Item Value
RNA id TU2256507
length 210
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G1973837
representative True

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31607439 ~ 31607648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAggttgggtggtggtggtggtttccTAGGTTCCCTGTGAGAGGCGGCAGTAGCGCTGCAGTAACTCATAGATTCACATCTCTCAGGCATTCCCTCCAGTCCAGTGAGACTGGTGTTGCAACGGACGATTCTCTCCCGTCTTCTCCCACAACCCCCTGGTCGTCTGCAGGCCACAATCTGAGGAGTTTACAGCTCAGGGTCCCACCCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2256510 lncRNA downstream 1505 31605688 ~ 31605934 (-) True G1973840
TU2256495 lncRNA downstream 4454 31602780 ~ 31602985 (-) True G1973830
TU2256493 lncRNA downstream 6082 31601077 ~ 31601357 (-) True G1973828
TU2256492 lncRNA downstream 6548 31600625 ~ 31600891 (-) True G1973827
TU2256491 lncRNA downstream 6885 31600354 ~ 31600554 (-) True G1973826
TU2256506 lncRNA upstream 12135 31619783 ~ 31619980 (-) True G1973836
TU2256525 lncRNA upstream 67306 31674954 ~ 31675316 (-) True G1973855
TU2256551 lncRNA upstream 175517 31783165 ~ 31786895 (-) False G1973880
TU2256553 lncRNA upstream 177049 31784697 ~ 31785171 (-) False G1973880
TU2256557 lncRNA upstream 177049 31784697 ~ 31786895 (-) False G1973880
LOC110505792 mRNA downstream 333473 31272049 ~ 31273966 (-) False LOC110505792
XR_002470590.2 mRNA downstream 459371 31114868 ~ 31148068 (-) True LOC110504336
XM_021585222.2 mRNA downstream 518141 31087360 ~ 31089298 (-) True LOC110505787
XM_021585219.2 mRNA downstream 615350 30986765 ~ 30992089 (-) True LOC110505783
XM_036962347.1 mRNA downstream 621675 30913042 ~ 30985764 (-) True LOC110505782
XM_021585245.2 mRNA upstream 14394 31622042 ~ 31630448 (-) False LOC110505798
XM_021585246.2 mRNA upstream 15905 31623553 ~ 31630084 (-) False LOC110505798
XM_021585247.2 mRNA upstream 15905 31623553 ~ 31632417 (-) True LOC110505798
XM_021583035.2 mRNA upstream 25111 31632759 ~ 31636055 (-) True LOC110504224
XM_021585248.2 mRNA upstream 35100 31642748 ~ 31710036 (-) False LOC110505800
TU2256456 other downstream 22393 31584540 ~ 31585046 (-) True G1973793
TU2255376 other downstream 841506 30764956 ~ 30765933 (-) True G1972851
TU2255302 other downstream 924036 30626089 ~ 30683403 (-) False G1972810
TU2255303 other downstream 924036 30628261 ~ 30683403 (-) False G1972810
TU2255304 other downstream 931924 30616588 ~ 30675515 (-) False G1972810
TU2256505 other upstream 6773 31614421 ~ 31618499 (-) True G1973835
TU2256690 other upstream 378795 31986443 ~ 31986884 (-) True G1974000
TU2258248 other upstream 1712081 33319729 ~ 33324325 (-) True G1975453
TU2258576 other upstream 1948782 33556430 ~ 33556811 (-) True G1975763
TU2260072 other upstream 2869972 34477620 ~ 34478558 (-) False G1977046

Expression Profile