RNA id: TU2256252


Basic Information

Item Value
RNA id TU2256252
length 2359
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1973633
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31713433 ~ 31715906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGCATCTTCCTTTCTCTTACGTCAACATCCTAAACGTAACGGTTATTGACCCCATATAAAAACATGAGAAATATCTTTACAAAAAACAACCATCGTTCTCAAAGTGGAAAAACTTCACTATTTACATGGCCTATTATAAAAAAAATGGAGTTTAATAATATTGTTTTACAGAAATTTAATCTACACTATATGGTTCTAACCAACAGGTCTTGATGCAGTTTAACAAGATGGCTGGCTTTTAATTCTGCAAGCTTTACCTCTTAGCAACATTTCATTTCCCCCAATTCAACCACAAATACACAAATtctttcaaatggcacccataGTCATTTCTACTAATATTATAGTGAATGTCAGGGTGTAATTATTACATACATCACTGAAGTGAAGCTGCTCTTAGAAAAAAGTCACAAGCGCTGCAGATTCAATTACCTGTCCATTATGACAATATTTATCAAGGGTTTTCTATGTTGAGATGTGTTGTCTGCACTGCAAACTGAGCGGTTAGTAGTTAGTGTAGAAAACAGTGTgccatacaaaaaaatatataattacagATGAAATGTTCCTTAAAAGGTGAAGTAACTACAAACATGAAGAAACAGAGATTTCCCACTCCAATATGGAGACAGGATTTTTTCAGAGGccctatacacacacaacatTACAGTACTATGAACAGAACTGGCACCCGTACCATCAGATGTCTGTCTACAAATCCTCTTGCTCTGATAGAACAAATAATATACTCTAAGGGCTCAAACACACCAATAGTGTTTGTCTGCTGAGAGTACTTGTGAACCGAGTGCAAACCGGTTTTACATATAGAAACGTGCGAAGACGTCAACAGCGCGCTTAACAACAAGCTGTAAACGACAGATCTACATGTGTGTAACCCTTAAAGGCAGAACATACTGGAAACCCTTAAATGTACCAAGGTCCTGGCAGCTTATTATTATAGAATATTCATTGAATCTCCTCTTTAAAATGAGGGAAAGAAAAGCAACAGTTCagggcctgtatttatagtgtcTTAGACATgcgttgatctaggatcagatccatGTGAacttattcattatgatccaaAAGGTtaaactgattctagatctgtaCTCTTATTCTGAGACACTTCTAGATAGGAGATTTgaacagaaaaacaaacaaaaactccTGACTGTCAGAACAGTGTCATGTCAGTCTTTCCGATACGCCCCGTTAGGTAGTGTTGCttctaaaacaaaacaaaatcacATTTTTCACAAGGATATCCTAAATGTATGTTCGTAAATGCAGTTATCCCCGATTGGTTTAGCCAGaagggtcatattcattaagtcACACTGTAGAGAAATGCTTTGCAACAGAAAATGAACGTTTCTCATTGGACAAGTTCAAGTAGTCTCACCCCATTTCAGTCCGTTTTTGTCCGTTTGTTGCCGAATGAATACGACCTATGTGAATGGGGGTATTGAGGAGAGATGGCTACAATGTCGACCTGAGCCTAAGTGAGTTGGTTCTTAGTTCTATGTCTGAGGGTTGCTCTTTAGTCATCGTGGGTCTAGTCTTGGCATGGGCCTCATCTGCAGCAGTGGGGGCGGGGTCAGGGCATCCCCCGGCTTCTCATTGGACTCCAGCACCTCGGCCACGCCTCCAACTTTCATCTGCAGCAGCAGTGGCGGGGTCAGTGCTTTTTGCAGTACATCTTGACCTTTTGTAGTGCATGCTTTAGCTTGTTGGCTGTGCCCGTTGACAGCAGGAGCAGAAACAGTCTCTGATGGTTTCAGGTTGGATCCAAAACCAACTTTAAGGTCCTCTGCCTGTGGTATTGGCAGACCTGGGCCTTTGGAAGTCTTTTCCTGGCCCTTGTCCTCATCCAGTCTCAGGAACAAGGGGCTGAGGGAGCGCTCGTCATCTCCATCTCCGATGATCTCCTTCTCTGTCTTTGGTGGTAGTAGCACCCTGTCTGTCTGAGGTGTGGGTACCCTCACAGTCCCCATCTGCCCAGGCTCGGTGTGTGGTATGCGGGAGACCACTGGAGGACCTCTGGGGCTGCTGTTGTTGTCTGTGGTAATCTGCTGGTTAAGGATGAAGATCTCGTTGAGGACAGACGTCAGGCTCTCGTCTTCACCATCACCATCTTTGTTGTCTTCGTCCTCCTCAGAGTTTCCATCTGCGTCGTTGATCCCTACACTGTCTACAGCGTGGTCCAGCTGCTTCCCCAGAACCTCTCCGTACTCCAACCCACTGCCCCTACCCTTCACTGGGGCTGGCCTCCTCTGAGCTCCCCCTGACACACCTGGAGCTGACTGGTTCTGTTGGGCTTTAACCAATGAAATGACATCGGTGAAATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256222 lncRNA upstream 38024 31673497 ~ 31675409 (+) True G1973605
TU2256198 lncRNA upstream 70692 31640316 ~ 31642741 (+) True LOC118944345
TU2256172 lncRNA upstream 100133 31613052 ~ 31613300 (+) True G1973568
TU2256168 lncRNA upstream 103776 31609358 ~ 31609657 (+) True G1973564
TU2256167 lncRNA upstream 104813 31608410 ~ 31608620 (+) True G1973563
TU2256280 lncRNA downstream 15755 31731661 ~ 31733672 (+) True G1973649
TU2256277 lncRNA downstream 24937 31740843 ~ 31741517 (+) True G1973646
TU2256283 lncRNA downstream 57786 31773692 ~ 31775891 (+) True G1973652
TU2256302 lncRNA downstream 68793 31784699 ~ 31786918 (+) True G1973670
TU2256369 lncRNA downstream 173810 31889716 ~ 31918882 (+) True G1973721
trnaa-ugc-181 mRNA upstream 23158 31690200 ~ 31690275 (+) True trnaa-ugc-181
XR_005039590.1 mRNA upstream 70687 31640296 ~ 31642746 (+) False LOC118944345
XM_021585243.2 mRNA upstream 94908 31590383 ~ 31618525 (+) False LOC110505797
XM_036962789.1 mRNA downstream 91581 31807487 ~ 31910358 (+) False LOC110505805
XM_036962790.1 mRNA downstream 91584 31807490 ~ 31910358 (+) False LOC110505805
XM_036962788.1 mRNA downstream 91585 31807491 ~ 31910358 (+) False LOC110505805
XM_036962510.1 mRNA downstream 218826 31934732 ~ 31977371 (+) False LOC110504226
XM_036962224.1 mRNA downstream 305366 32021272 ~ 32130564 (+) False LOC110510947
TU2255965 other upstream 325697 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 509442 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 555697 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 1017119 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 1033438 30659404 ~ 30679995 (+) True G1972245
TU2256257 other downstream 2618 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 71339 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 164204 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 178077 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other downstream 178077 31893983 ~ 31909469 (+) True LOC110505805

Expression Profile