RNA id: TU2256302


Basic Information

Item Value
RNA id TU2256302
length 2220
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1973670
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31784699 ~ 31786918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGAGAATAAACACTTTATTAGCAAGTTTTTGTGGACCCAGAGCTCAAAAGCATAATTAGTGTAAAGCAGAATATAAATAAATCCACAAATTCATAGATACACACTTGACTACAGACTGAGTGCCATAGGGTCAGAGCCAACAGCAATAAAGTCGAGTGAATTTAAAAAATCTACAGGTTGCCTTTCTTTCcactacacacactctgtctcttgTTGGCAGGGAAAGCCTGGCACTAGCTGTGTTACTTAATGCTTGGCATATCAATGACCCTGGTCAAAGCGGAAGAGGGGTCACTCTCACAACGACAACAGGCTGATTCATATGAGCAGGGTGTCATTGACTTAGGAGTTTGAAAAGTGGTACATTTGGGCTATTTAAGACTGCTGATTTTGATACTATATTCACAACTTTTGCTCTGTATATAGCATTGATAATTACgataatatattttatttgtcagACACCTTTCAGGGCACTCAATCTTACATTAAAAGTAGGCCTAGATAAAATCAGGtgccaatcaaattgtatttgtcaaacatgcgctgaatacaacaggtttagaccttactatgaaatgcttacttacgagcccttaaccaacaatgcaaagttttttttttaaataagtaaGAAGCATTTGCTAAATAAATGAATGAAAAAAATAGTAGCACAATAAAAtagcaataacgaggctatatatagggggtaccggtaacgagtcaatgtgcaggggtacgggctagtcgaggtaattgaggtaatatgtacatgtaggtaggggtaaagtgactatgcatagataataaacagagagtagcaacagtgtatgtgaagagtgtgaatgtatgtgtgtgcgtaaatattaatgtgtgtgttggaatgtcagtgtagtatgtgtgagtgtgtaattAAAGTCCAGTGAGTGTAAATCGAGActgtgcaagagagtcagtgcaaaacataataacaataaaataagtgggtcaatgcaaatagtccgggtagccatttgattaactgttcatcagtcttatggcttgggggtagaagctgttaaaacttcttagggctatgGTCTATTTTCCTGAATTTCCACCTGACTGATGTGccaaaagtaaactgcctgttactcaggcccagaagccaggatatgcatataattggtagcccTAGATAGAaagcactttgaagtttgtagaaattgtaaaacacaattgatatggtaggtggaaatccaaagaaaaaacattttttgaggacccaggctcttataatggaaagctatgggtcctatgcaattctagctcccagattgcaattcctatggcttccactagatgtcaatagtctttGTTTAAgttttcaggcttgtttcttccaaaacgaggaAGAATTTGGAGTTTTGGTATAGAGTCCAAGTGGAAAATCAGTCTGTCGGCGCGTGACGAAGAGGAGGCGCACCTGCTAATTTGACTTTTCTATAGAACATACTTCTTCCCGTATTACAttttatagtttaattacattttaaggtacctgaggattaaatagaaacgtTTGTCTTGTATAGTTTGACTTGTTtgaacaaagtttaggggtagctttttggactcctttgtctgcatgttgaacaagtAGATCACTGAACTCGATGGCACCAACTAAACTGCCTTTTTGGGATATAAACaaggattttatcaaacaaaactaccattcatgttgtagctggaacccttgggattgcaaacagaagaagattttcaaaagtaagtgatttatttaatcgctatttgtgattttatgaagcctgtgctggtttaaaaatatgttgatgtagggcgccgtcctcaaacaaccgcatggtatgctttcgctgtaaagcctattgtaaatcggacaatggagttagattaacaagaatttaagcttttaaccgatataaggTACTTTTGTATGTTCATAAATGTTTCATACGATTATTTAtctgaattgcgcgccctccaataTCACCGGATGCTGTCGACAGGTGTCCAGCTAGCGGGATGCCTAGCCTTATTAAGGAGTCTTTTAGTCCCAGACTTGGCCTCCCAGTTCCGCTTGCCATGCTGTAGTAGAGAAAACAGCCTATgactttagggccttcctctgacaccgcctggaatagaggtcctggatgacaggaagctcagcctcagtgatgtactgggccgtac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256283 lncRNA upstream 8808 31773692 ~ 31775891 (+) True G1973652
TU2256277 lncRNA upstream 43182 31740843 ~ 31741517 (+) True G1973646
TU2256280 lncRNA upstream 51027 31731661 ~ 31733672 (+) True G1973649
TU2256252 lncRNA upstream 68793 31713433 ~ 31715906 (+) False G1973633
TU2256253 lncRNA upstream 68793 31713433 ~ 31715906 (+) True G1973633
TU2256369 lncRNA downstream 102798 31889716 ~ 31918882 (+) True G1973721
TU2256388 lncRNA downstream 137096 31924014 ~ 31924219 (+) True G1973740
TU2256392 lncRNA downstream 145444 31932362 ~ 31932579 (+) True G1973744
TU2256394 lncRNA downstream 147117 31934035 ~ 31934460 (+) True G1973746
TU2256397 lncRNA downstream 186335 31973253 ~ 31977369 (+) True LOC110504226
trnaa-ugc-181 mRNA upstream 94424 31690200 ~ 31690275 (+) True trnaa-ugc-181
XR_005039590.1 mRNA upstream 141953 31640296 ~ 31642746 (+) False LOC118944345
XM_036963032.1 mRNA upstream 166174 31595079 ~ 31618525 (+) False LOC110505797
XM_036962789.1 mRNA downstream 20569 31807487 ~ 31910358 (+) False LOC110505805
XM_036962790.1 mRNA downstream 20572 31807490 ~ 31910358 (+) False LOC110505805
XM_036962788.1 mRNA downstream 20573 31807491 ~ 31910358 (+) False LOC110505805
XM_036962510.1 mRNA downstream 147814 31934732 ~ 31977371 (+) False LOC110504226
XM_036962224.1 mRNA downstream 234354 32021272 ~ 32130564 (+) False LOC110510947
TU2256257 other upstream 65731 31718524 ~ 31718968 (+) True G1973635
TU2255965 other upstream 396963 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 580708 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 626963 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 1088385 30695233 ~ 30696314 (+) True G1972252
TU2256301 other downstream 327 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 93192 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 107065 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other downstream 107065 31893983 ~ 31909469 (+) True LOC110505805
TU2256718 other downstream 234387 32021305 ~ 32059078 (+) True LOC110510947

Expression Profile