RNA id: TU2256369


Basic Information

Item Value
RNA id TU2256369
length 663
lncRNA type sense_over
GC content 0.53
exon number 2
gene id G1973721
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31889716 ~ 31918882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatacagcccgacaggatgctctcgattgtgcatctgtaaaagtttgtgagtgcttttggtgacaagccaaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacgatgctgtctgtgtgggtggaccatttcagtttgtccgtgatgtggaCTTTACCctttctccactactgttccgtcgatgtggataggggggtgctccctctgctgtttcctgaagtccacgatcatctcctttgttttgttgacattgagtgtgaggttattttcctgacaccacactccgagggccctcacctcctccctgtaggtcgtcttgttgttgttggtaatcaagcctaccactgtagtgtcgtctgcaaacttgatgattgagttggaggcgtgcatggccacgcagtcgtgggtgaacagggagtacaggagagggctcagaacgcacccttgtggggacccagtgttgaggatcagcggggtggagatgttgttacctaccctcaccacctgggggcagcccgtcaggaagtccaggatccagttgcacagggcggggtcgagacccagggtctcgagcttaatgacgagtttggagggtactatggtgttaaatgctgagctgtactcgatgaacagcattcttacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256302 lncRNA upstream 102798 31784699 ~ 31786918 (+) True G1973670
TU2256283 lncRNA upstream 113825 31773692 ~ 31775891 (+) True G1973652
TU2256277 lncRNA upstream 148199 31740843 ~ 31741517 (+) True G1973646
TU2256280 lncRNA upstream 156044 31731661 ~ 31733672 (+) True G1973649
TU2256252 lncRNA upstream 173810 31713433 ~ 31715906 (+) False G1973633
TU2256388 lncRNA downstream 5132 31924014 ~ 31924219 (+) True G1973740
TU2256392 lncRNA downstream 13480 31932362 ~ 31932579 (+) True G1973744
TU2256394 lncRNA downstream 15153 31934035 ~ 31934460 (+) True G1973746
TU2256397 lncRNA downstream 54371 31973253 ~ 31977369 (+) True LOC110504226
TU2256679 lncRNA downstream 60157 31979039 ~ 31979248 (+) True G1973989
trnaa-ugc-181 mRNA upstream 199441 31690200 ~ 31690275 (+) True trnaa-ugc-181
XR_005039590.1 mRNA upstream 246970 31640296 ~ 31642746 (+) False LOC118944345
XM_036963032.1 mRNA upstream 271191 31595079 ~ 31618525 (+) False LOC110505797
XM_036962510.1 mRNA downstream 15850 31934732 ~ 31977371 (+) False LOC110504226
XM_036962224.1 mRNA downstream 102390 32021272 ~ 32130564 (+) False LOC110510947
XM_036962225.1 mRNA downstream 102391 32021273 ~ 32135673 (+) False LOC110510947
XM_036962227.1 mRNA downstream 102391 32021273 ~ 32135673 (+) False LOC110510947
XM_036962727.1 mRNA downstream 1205685 33124567 ~ 33142910 (+) True LOC118944263
TU2256365 other upstream 8896 31880110 ~ 31880820 (+) True G1973717
TU2256301 other upstream 100267 31787245 ~ 31789449 (+) True G1973669
TU2256257 other upstream 170748 31718524 ~ 31718968 (+) True G1973635
TU2255965 other upstream 501980 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 685725 31203615 ~ 31203991 (+) True G1973193
TU2256718 other downstream 102423 32021305 ~ 32059078 (+) True LOC110510947
TU2256749 other downstream 155110 32073992 ~ 32074761 (+) True G1974049
TU2257717 other downstream 985244 32904126 ~ 32905975 (+) True G1974953
TU2258851 other downstream 1868122 33787004 ~ 33788129 (+) True G1976029
TU2258898 other downstream 1917231 33836113 ~ 33840078 (+) False G1976067

Expression Profile