RNA id: TU2256392


Basic Information

Item Value
RNA id TU2256392
length 218
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1973744
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31932362 ~ 31932579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatatttttgcaaaaTCCTGCATGTAGAATTGTTCATTTCTGCTACTGCTGTAATAACTCCCTTCACCCAATACTGGTTGGTTTGATCCGGCATGCTACTATTAACCACATGTTTACATGGCTGCTTGAGTTGGAGGTTCGGAACCAGCGAGGAAAGATGGCAGAAGCAGATGACGTGGATTCTGAATACAATGGCAGTAGAATCAAGGAGAATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256388 lncRNA upstream 8143 31924014 ~ 31924219 (+) True G1973740
TU2256369 lncRNA upstream 13480 31889716 ~ 31918882 (+) True G1973721
TU2256302 lncRNA upstream 145444 31784699 ~ 31786918 (+) True G1973670
TU2256283 lncRNA upstream 156471 31773692 ~ 31775891 (+) True G1973652
TU2256277 lncRNA upstream 190845 31740843 ~ 31741517 (+) True G1973646
TU2256394 lncRNA downstream 1456 31934035 ~ 31934460 (+) True G1973746
TU2256397 lncRNA downstream 40674 31973253 ~ 31977369 (+) True LOC110504226
TU2256679 lncRNA downstream 46460 31979039 ~ 31979248 (+) True G1973989
TU2256688 lncRNA downstream 52152 31984731 ~ 31984964 (+) True G1973998
TU2256708 lncRNA downstream 79927 32012506 ~ 32012884 (+) True G1974012
XM_036962789.1 mRNA upstream 22004 31807487 ~ 31910358 (+) False LOC110505805
XM_036962790.1 mRNA upstream 22004 31807490 ~ 31910358 (+) False LOC110505805
XM_036962788.1 mRNA upstream 22004 31807491 ~ 31910358 (+) False LOC110505805
trnaa-ugc-181 mRNA upstream 242087 31690200 ~ 31690275 (+) True trnaa-ugc-181
XR_005039590.1 mRNA upstream 289616 31640296 ~ 31642746 (+) False LOC118944345
XM_036962510.1 mRNA downstream 2153 31934732 ~ 31977371 (+) False LOC110504226
XM_036962224.1 mRNA downstream 88693 32021272 ~ 32130564 (+) False LOC110510947
XM_036962225.1 mRNA downstream 88694 32021273 ~ 32135673 (+) False LOC110510947
XM_036962227.1 mRNA downstream 88694 32021273 ~ 32135673 (+) False LOC110510947
XM_036962727.1 mRNA downstream 1191988 33124567 ~ 33142910 (+) True LOC118944263
TU2256317 other upstream 22893 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other upstream 22893 31893983 ~ 31909469 (+) True LOC110505805
TU2256365 other upstream 51542 31880110 ~ 31880820 (+) True G1973717
TU2256301 other upstream 142913 31787245 ~ 31789449 (+) True G1973669
TU2256257 other upstream 213394 31718524 ~ 31718968 (+) True G1973635
TU2256718 other downstream 88726 32021305 ~ 32059078 (+) True LOC110510947
TU2256749 other downstream 141413 32073992 ~ 32074761 (+) True G1974049
TU2257717 other downstream 971547 32904126 ~ 32905975 (+) True G1974953
TU2258851 other downstream 1854425 33787004 ~ 33788129 (+) True G1976029
TU2258898 other downstream 1903534 33836113 ~ 33840078 (+) False G1976067

Expression Profile