RNA id: TU2258898


Basic Information

Item Value
RNA id TU2258898
length 3714
RNA type TUCP
GC content 0.39
exon number 2
gene id G1976067
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33836113 ~ 33840078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaatttctaaacggttcacccgaaatggatgaaaataccctcaaattaaagcacCAATCCaagccagaacaacaacaaatgtgtcactgtGAAATTACTTTTGGACCTCACTGTACATGTACACCAAAAATATAGGCTTAGTGAAATGCATTCTGTTTGTGTCAAATCATCTGATTATGCTGTCCTCTAGATGGCAGAATACACAAGGTTACTGAGGCCTGGGATCAGTTcacccctgtccatgtaatcctattcattgtgatctaaaaggctaaactgatcatAAATCAGCAGTCCTACTATGAGACGTGATACACACGAACCCAGATAATTTCTTGCAACCGATGGCAATTTATGTTATTACATTAGTATGAACCGAAAATTATTGACACCTCATCCTAGATTTACTCTGATTATATTGAATTACAAAAAGGACTTATCTGACAGCAGGAGGTTCGCAATCGGCTTCAAGGGAAGGCAAAAGGCACTGCAGGCCTTTTTAAGTTCAGGGGCAGTGACTAGAATGTTCCCAAACACACTTCCAACGTATATCTGAACATGCGAATACACGCCATAAGCTACAATGAAATGCTGTGAGCTGTGGCTTCTACTCATGCGTTACGCATTAAAAACATCTTGATCAAATAAATCACACAACAGACAAAAGGGCAAGACGTCCTTTATTGCACTTGACAGACTGGGTTCCAATACAAAAGTACGACGCCCTCTCTGAGTTCTTCCCAGGTCACTTCATTCACAAGGAAGTATGTATTGTGTCCCTTGATCATGCAGACCTCCACACAACCCATCTAGATCTCACTAAGACATGCAATGTCTGTATAGGCAACCTATTTAATCAAAATGCACATATAAGGCTGTTAAAATCCCCTTTTGTACAGGAAGTCCTATATGTATCATGTGGCTTTTACACATAGCCTACACACATGTTATAAATTCACCATTCTGTTGGTGAAAGTGttcctacacactcacacaactaCACTGACACCAaggcacgcacgcatgcacatacacacactgacaccgcacacacactcacacatattgacaccgcacacacactcacactttcaCTCTTTGTAtacattgctgctactctgtttattatctatcctgattgccttgtcacttttacccttacctacatgtgcataattacctcaattacctcgtatccctgcatattgactcggtaccggtaagtTCTTGTTTATAgtcttgttattattattttattgtgttactatttcctttttttatttagcacattttttggtactttttaactctgcattgttgggaaagggatcgtaaataagcatttcatggtatagtctacacctgttgtattcggcgcatgtgacaaatacaatcttATTTCATAGGAATTCTGTGCTAGTTGGAGGAATTATTTTGAAGATTCAGGTGGCTGTAAAAACAAAAGCagatttaaataaaatgtttatcaTAGTACATTACTTAATTACAGACATTGTTaaaaaaacatttctaaagaaaCATTTCATAAACCATTCTCTTTTTATTAAAAGGACTTTTACAAGCTCAAGCACAGCTGAATCAATCACAGCAGTTTAAAAAACAACCCACAGGCATACAAACATAACTATTTAACAGAATGAATCGTTAAACTTAAAAAATGCCTTAATATACTGTACTTCCAACGTATCCAAGACTCTCAACTGACACCCTCCAAGCCTCACAACTGACACCCTCCAAGCCTCTCAGCTGACACCCTCCAAGCCTCACAACTGACAACCTCCAAGCCTCACAACTGACACCCTCCAAGCCTCACAACTGACACCCTCTAAGCCTCACAACTGACACCCTCCAAGCCTCACAACTGACACCCTCCAAGCCTCACAACTGACACCGTCTCAAGCCTCTGCAGAATCCACTGAGAGATTATTGTAAGACAAGTAGTACCTTCTAGAGGTTCATCGCCCAATGAAATGTGTGCTTTATCTCAAATGTGtaaatacagtgagctccaaaagtattgggacagtgacattttttgatgttgttttggctctgtagtccagcactttggattggaaatgatacattgactatgaggttaaggtgcagactgtcagctttaatttgagcaTTTTTATCCATactgggtgaaccgtttagaaattacagcactttttttttttacatagtacccccattttaggggaccaaaagtattgggacaaattgatttatatgtgtattaaagtagtcaaaagtttagtatttggtcccattttCCTAGCACACAGTGATTACATCAAGCATTTTCTgtttgatttggttgtgtttcagattactTTGCACCCAacagaaattaatggtaaataatgtgttgtgtcatttggagtcacttttattgtaaataattacagaatatgtttctaaacacttctacattaatgtggatgctaccatgattacagatagtccTGAATTAATTGTgagtaatgatgagtgagaaagttacagacgcacaaatatcatacccccccaaaaatgctaacctaccttgctattgtaatggtgagaggttagcatgtcttggaggaaTGATAGAAAATGCTAACCTACCTTgctattgtaatggtgagaggttagcatgtcttggaggtatgatagAAAATGCTAACCTACCTTgctattgtaatggtgagaggttagcatgtcttggaggtacgATAGAAAATCGTAACCTACCTTgctattgtaatggtgagaggttagcatgtcttggaggtacgATAGAAAATCGTAACCTACCTTgctattgtaatggtgagaggttagcatgtcttggatgTGATATTTGTACGTCTGTGAAATACCACACATTTTCTAACTTTTTCTTATGAAACGGTGTGTAAATTCTAAAATGACATAAAGGGATGAATCTGAAACATGTTTTTCCACAACATTTACATACATGGGCCCACTGCAAAGCTTCATAAACTGTATTCAAACTCTTtgcagaaaacaaaacattttaaataatGTGTTCTGTACAATCCTACAGACTCTTACAAGACTTCTCTCTTTGTACATCAATAAActcagagaaacatacagagtTATAGCTTTGTCTTTACAATGTAAGCATATCAGTTCAAGCCACATTAAAAGCCAAAGAGCAGAATCTTTAAAAACCTTTAAATGATTCTGGAATAAAAAAAAGCCTTAATTTGCTGTCGATATGAAATGTGTTGAAAGGAAAAGGGTTAGGGCCGATATGAATGAGGGACAATGTTGACTGGAGAAGAtagcaaagtgtgtgtgtgtgtgtgtgcatgcctgtgagaatgagtgtgtgtgtgtgtatgcctgtgagaatgagtgtgtgtgtgtgtatgactgtgagaatgagtgtgtgtgtgtgtgcatgcctgtgagaatgagtgtgtgtgtgtgtatacatgcctgtgagaatgagtgtgtgtatgtgtgtacgtgctTGTGTATGTGTCGTGTGTGTGACATGTACATGacatgtgtatctgtctgtgtgtgtgtgtgtgtgtgtgtgttcatttgccCAGGTTGAGCAGAAGGCGTGGCAGGTCTCTGTAATGAATCTGTGGCAGCACCAACAGACAGTAGAGGACCAGCCACAGCAGCAGGAGAACGTAGTACTCTGTCAATGACGTTGGAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2258881 lncRNA upstream 15395 33820193 ~ 33820718 (+) True G1976058
TU2258824 lncRNA upstream 78260 33757632 ~ 33757853 (+) True G1976003
TU2258821 lncRNA upstream 83156 33752721 ~ 33752957 (+) True G1976000
TU2258769 lncRNA upstream 99474 33730665 ~ 33736639 (+) True G1975951
TU2258743 lncRNA upstream 143672 33692145 ~ 33692441 (+) True G1975926
TU2258943 lncRNA downstream 57069 33897147 ~ 33897363 (+) True G1976101
TU2258944 lncRNA downstream 57817 33897895 ~ 33898285 (+) True G1976102
TU2258948 lncRNA downstream 67649 33907727 ~ 33912767 (+) False G1976106
TU2258949 lncRNA downstream 67649 33907727 ~ 33912767 (+) False G1976106
TU2258950 lncRNA downstream 67649 33907727 ~ 33912767 (+) True G1976106
XR_002470591.2 mRNA upstream 547505 33282986 ~ 33288608 (+) False LOC110504337
XM_036962727.1 mRNA upstream 693203 33124567 ~ 33142910 (+) True LOC118944263
XM_036962225.1 mRNA upstream 1700440 32021273 ~ 32135673 (+) False LOC110510947
XM_036962227.1 mRNA upstream 1700440 32021273 ~ 32135673 (+) False LOC110510947
XM_036962224.1 mRNA upstream 1705549 32021272 ~ 32130564 (+) False LOC110510947
XM_021585273.2 mRNA downstream 606623 34446701 ~ 34452587 (+) False dnal1
XM_036962961.1 mRNA downstream 607157 34447235 ~ 34452587 (+) False dnal1
XM_021585275.2 mRNA downstream 617437 34457515 ~ 34477147 (+) True tedc1
XM_021585277.2 mRNA downstream 841654 34681732 ~ 34685739 (+) True tmem121aa
XM_021585279.2 mRNA downstream 910806 34750884 ~ 34771020 (+) True LOC110505824
TU2258851 other upstream 47984 33787004 ~ 33788129 (+) True G1976029
TU2257717 other upstream 930138 32904126 ~ 32905975 (+) True G1974953
TU2256749 other upstream 1761352 32073992 ~ 32074761 (+) True G1974049
TU2256718 other upstream 1777035 32021305 ~ 32059078 (+) True LOC110510947
TU2256317 other upstream 1926644 31893983 ~ 31909469 (+) False LOC110505805
TU2259487 other downstream 608389 34448467 ~ 34452841 (+) True dnal1
TU2259519 other downstream 639952 34480030 ~ 34480897 (+) True G1976573
TU2259520 other downstream 640826 34480904 ~ 34481279 (+) True G1976574
TU2259521 other downstream 641441 34481519 ~ 34481921 (+) True G1976575
TU2259636 other downstream 861902 34701980 ~ 34703894 (+) True G1976680

Expression Profile