RNA id: TU2259049


Basic Information

Item Value
RNA id TU2259049
length 1959
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1976184
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33927681 ~ 33932054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagagagaggggagatagaaacagaggaggagagagaggggagatagaaacagagggggagagagaggggagatagaaacagagggggagagaaaggggagataaaaagagagcgcgagcgagcaACAGAGAACGAGAGGGGGAAAAGTCAAGGTTGAGAGGTTCATTGCGTCATTTTAAGAATCTGCTCAAAAAAAGGCCCCTCTCCCATAACAGCGGCTATTTCCATCTTATAATCTGGGCCCTGCTGAACATTACGTATAAAAACCAAAGTAAATTTGGCATCTAGAACACTCTGTGGTCCAAGAAAAAGTCAGGGGCCATAGTACAAGGCTTTATAATTGCTATATTCACCAAACGGTTTAACTGTGCCAAGGGATCATTACGAAAGTGTTCAAATATAGCATAGAACCTTGAGAAAGGGAAGCATATGGTTGAAACatgcctacagtacagtacagtaaagtacagtaaagtaaagtacagtacagtacaagtaGGATGTATATTTGGACAGTCAGAAGTGGGACATCCTGTATACCATTACTGACTGACTTGCTTAATCATCATCAGTATGTGTTAGATTTGAGTTGACTCATGATAGAACAGATATTGTGTTTCGGGGGACATGAGAACATCTTGCATCTAGAATGTCAACTATTGCTGATCTTTGAAGTGCTAGGCTGTCATTAACTCAGTGCTACAATTGATAAGGGTCATCTGTGCAAAAGGCATCATGTACAGGTGAAAAATAAAGCTCTAAAAACATCTTACACTCATCCAAGAAGAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTGAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTGAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAGAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTGAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTGAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTGAAAAAGCATAATGTTATTTATCAGGGTTAAAGGCAGTTTAAAAAAGTGTTATCCACACCAGTCTTTAAAATGGCAGCAAACCATGATAGGTATTTTTGGTATATGACAGATCACACTCAGTTAGTTATCTAAGTTATCTAAGACCATGTAAGCATCATTTCACCCCTTAAATAAAGGCAATCCACCTCCTTATCCCACATCACCTCCGCTCCCTACTCCAACATTATGCTAAGTGTTTGGTGGCCATtagctactgtagtagtgtgAATAGGAGTGTGGAGCGCTGTTCTCTGTGAAGTGCTGCCAGCCTGTGTGATAGAGGAGCTGAATTGGCCTGACTGTGTGAGAACAGCTGAggtcacccacccacacacacacagcagaaacgcattaacacactgacacacactcactgacccaaactgacacacactcactgacccaAACTGACACACACGCAGAGAATGGATTGAGGGTGAAGAGCAATGGTCTTCATAATCCTATATCTCCTTTCTATGTGGGTGGAGGTCCGTGGTAACGGAGCATGATGTTGAAGGAGCGGGCGAAGTTGTTGGACAGAGAGCAGCTGGAGGCTTCGTCCATCCAGGGCAGGAAGAAGGCAAAGAGGAGCAGAGCCAACAGCAGGAGCCAGAGGGGCAGGGCCACCCGACACACACGGTACAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2258953 lncRNA upstream 14601 33915196 ~ 33915435 (+) True G1976109
TU2258948 lncRNA upstream 17269 33907727 ~ 33912767 (+) False G1976106
TU2258949 lncRNA upstream 17269 33907727 ~ 33912767 (+) False G1976106
TU2258950 lncRNA upstream 17269 33907727 ~ 33912767 (+) True G1976106
TU2258944 lncRNA upstream 31751 33897895 ~ 33898285 (+) True G1976102
TU2259059 lncRNA downstream 11073 33943127 ~ 33943900 (+) True G1976185
TU2259080 lncRNA downstream 32605 33964659 ~ 33965088 (+) True G1976201
TU2259097 lncRNA downstream 44702 33976756 ~ 33977881 (+) True G1976217
TU2259092 lncRNA downstream 49415 33981469 ~ 33982302 (+) True G1976212
TU2259134 lncRNA downstream 118207 34050261 ~ 34050490 (+) True G1976252
XR_002470591.2 mRNA upstream 641428 33282986 ~ 33288608 (+) False LOC110504337
XM_036962727.1 mRNA upstream 787126 33124567 ~ 33142910 (+) True LOC118944263
XM_036962225.1 mRNA upstream 1794363 32021273 ~ 32135673 (+) False LOC110510947
XM_036962227.1 mRNA upstream 1794363 32021273 ~ 32135673 (+) False LOC110510947
XM_036962224.1 mRNA upstream 1799472 32021272 ~ 32130564 (+) False LOC110510947
XM_021585273.2 mRNA downstream 514647 34446701 ~ 34452587 (+) False dnal1
XM_036962961.1 mRNA downstream 515181 34447235 ~ 34452587 (+) False dnal1
XM_021585275.2 mRNA downstream 525461 34457515 ~ 34477147 (+) True tedc1
XM_021585277.2 mRNA downstream 749678 34681732 ~ 34685739 (+) True tmem121aa
XM_021585279.2 mRNA downstream 818830 34750884 ~ 34771020 (+) True LOC110505824
TU2258898 other upstream 89958 33836113 ~ 33840078 (+) False G1976067
TU2258851 other upstream 141907 33787004 ~ 33788129 (+) True G1976029
TU2257717 other upstream 1024061 32904126 ~ 32905975 (+) True G1974953
TU2256749 other upstream 1855275 32073992 ~ 32074761 (+) True G1974049
TU2256718 other upstream 1870958 32021305 ~ 32059078 (+) True LOC110510947
TU2259487 other downstream 516413 34448467 ~ 34452841 (+) True dnal1
TU2259519 other downstream 547976 34480030 ~ 34480897 (+) True G1976573
TU2259520 other downstream 548850 34480904 ~ 34481279 (+) True G1976574
TU2259521 other downstream 549465 34481519 ~ 34481921 (+) True G1976575
TU2259636 other downstream 769926 34701980 ~ 34703894 (+) True G1976680

Expression Profile