RNA id: TU2259197


Basic Information

Item Value
RNA id TU2259197
length 244
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1976307
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34049926 ~ 34050169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGAAGTGgttctagggtttccgggatgatgatgtggatgtgagccatgaccagcctttcaaagcacttcatggctaccaatgtGAGTGTTACGGGGCcatagtcatttaggcaagttacattcgctttcttgggcacagggactatggtggtctgcttaaaacatgtagatattacagactcggtcagggagaggtttaaaatgtcagtgaagacacttgccagttggtcagcgcatgctc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259144 lncRNA downstream 60969 33982437 ~ 33988957 (-) True G1976257
TU2259143 lncRNA downstream 67581 33981363 ~ 33982345 (-) True G1976256
TU2259037 lncRNA downstream 140228 33904827 ~ 33909698 (-) True G1976174
TU2259035 lncRNA downstream 141478 33903534 ~ 33908448 (-) True G1976172
TU2258998 lncRNA downstream 201034 33848514 ~ 33848892 (-) True G1976137
TU2259221 lncRNA upstream 13750 34063919 ~ 34064216 (-) True G1976331
TU2259223 lncRNA upstream 14530 34064699 ~ 34065539 (-) False G1976333
TU2259225 lncRNA upstream 15238 34065407 ~ 34065929 (-) True G1976333
TU2259792 lncRNA upstream 18111 34068280 ~ 34068460 (-) True G1976821
TU2259832 lncRNA upstream 94278 34144447 ~ 34145605 (-) True G1976857
XM_021585269.2 mRNA downstream 32954 33989997 ~ 34016972 (-) True LOC110505815
XM_036962340.1 mRNA downstream 68885 33931665 ~ 33981041 (-) False LOC110505813
XM_036962341.1 mRNA downstream 68885 33931665 ~ 33981041 (-) True LOC110505813
XM_036962339.1 mRNA downstream 68888 33931665 ~ 33981038 (-) False LOC110505813
XM_036962342.1 mRNA downstream 72074 33931665 ~ 33977852 (-) False LOC110505813
LOC110504228 mRNA upstream 3382 34053551 ~ 34059575 (-) True LOC110504228
XM_021585270.2 mRNA upstream 18987 34069156 ~ 34072609 (-) True eif2s1a
XM_036962531.1 mRNA upstream 23045 34073214 ~ 34117847 (-) True mpp5a
XM_036962408.1 mRNA upstream 68007 34118176 ~ 34235523 (-) False gphna
XM_036962410.1 mRNA upstream 68007 34118176 ~ 34235523 (-) False gphna
TU2258576 other downstream 493115 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 725601 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2063042 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2431427 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2464880 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 427451 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 825216 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 919983 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 924624 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 976931 35027100 ~ 35100978 (-) False G1977346

Expression Profile