RNA id: TU2259792


Basic Information

Item Value
RNA id TU2259792
length 181
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1976821
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34068280 ~ 34068460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAATCCAATTTCTTGTTAGCAATTGGTGGTAGTTGCCGTGTTCACGTCGTGTCGGGAACTTGCTTACTCGTAGAAAGATGATACTTGAGTTTCCCGCATGGAAAGTATCAGAATCAACCAATAGGAAGCTCTATGCAAATAACCTAAGTTAATTTTATTTAAAAGGTCCCACATTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259225 lncRNA downstream 2351 34065407 ~ 34065929 (-) True G1976333
TU2259223 lncRNA downstream 2741 34064699 ~ 34065539 (-) False G1976333
TU2259221 lncRNA downstream 4064 34063919 ~ 34064216 (-) True G1976331
TU2259197 lncRNA downstream 18111 34049926 ~ 34050169 (-) True G1976307
TU2259144 lncRNA downstream 79323 33982437 ~ 33988957 (-) True G1976257
TU2259832 lncRNA upstream 75987 34144447 ~ 34145605 (-) True G1976857
TU2259847 lncRNA upstream 98161 34166621 ~ 34167074 (-) True G1976866
TU2259853 lncRNA upstream 112783 34181243 ~ 34181870 (-) True G1976872
TU2259877 lncRNA upstream 158244 34226704 ~ 34227635 (-) True G1976896
TU2259878 lncRNA upstream 159398 34227858 ~ 34228499 (-) True G1976897
LOC110504228 mRNA downstream 8705 34053551 ~ 34059575 (-) True LOC110504228
XM_021585269.2 mRNA downstream 51308 33989997 ~ 34016972 (-) True LOC110505815
XM_036962340.1 mRNA downstream 87239 33931665 ~ 33981041 (-) False LOC110505813
XM_036962341.1 mRNA downstream 87239 33931665 ~ 33981041 (-) True LOC110505813
XM_036962339.1 mRNA downstream 87242 33931665 ~ 33981038 (-) False LOC110505813
XM_021585270.2 mRNA upstream 696 34069156 ~ 34072609 (-) True eif2s1a
XM_036962531.1 mRNA upstream 4754 34073214 ~ 34117847 (-) True mpp5a
XM_036962408.1 mRNA upstream 49716 34118176 ~ 34235523 (-) False gphna
XM_036962410.1 mRNA upstream 49716 34118176 ~ 34235523 (-) False gphna
XM_036962411.1 mRNA upstream 49716 34118176 ~ 34235523 (-) False gphna
TU2258576 other downstream 511469 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 743955 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2081396 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2449781 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2483234 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 409160 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 806925 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 901692 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 906333 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 958640 35027100 ~ 35100978 (-) False G1977346

Expression Profile