RNA id: TU2259832


Basic Information

Item Value
RNA id TU2259832
length 959
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1976857
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34144447 ~ 34145605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaaacaacaacaacaacaccgcCCCActgagaaaacaacaacaacaacaccgcCCCActgagaaaacaacaacaacaacaacaccACCCCACTGAAAAAAAAGCAAAAAAAACGCCGCCCACTGAAAACAAAATAATTAAACTTCACCACCCCAATGAAAAAAAAACACCTCCCCACTGATTGCCAAGATTGCCCACTGCCCAGGCTGTGGCAGACATAGTCTCTGTTGGGTGTCTTGGGGATACACAACCAGGGGACACAGGAGGTGCTCCAGTGTCCTCTCTCTTCACTCCACCGGGTCAGTTCACCTCCTGAACGCTAAGGGGCGATAGAAGACCTCAGGCCTGGCCCATGGGCTGCTACTGTTACTAGTCCTGATGTTGCCATTGCTTCTGAATCTGTTGCATGACCTGGCTTCTAGCATCACCCTGGCTGCTCATCCGTTGTTCTTTACAAATGCTGTTTTGAATTAAAAAGAAAATTGTACCTTCACACTGAAGAAGTCTGTGAAGCTGAAATGCCTGTGAATTCTATCCCAGATGCAGTGAAAATATTCCAAAAACATTGAATAATGACGTAACCTTTATGCAAAGTGTTTGGGAGTGCGAACCCATTACACCTTTTTGCTTCTGTGAATTGGTGGGTTTTTCGCCCCAGCCAAGCTTCTGGGAGAGCACCGTAGTTCTCTTTTGATTTGCTAGCAACACCCACCCACTATGCTCCTCCTCCTCATATTACATTAGTATTCTACATTTATGGAGGAAGTTTCACCCTGATGTCCTGAGCAGTTCAGTCCATGCCCAGTTCCTGCACCATGTTAGAAGAACACAGGAGTTTGTCATGTAAACATTTATGTAAATGATTATTGAACAGCACACACCTCTTAATCACCTCCCAACCATCCAAACCTTTGGGCAAAACCTCACGTTGATGGGTCCAGGTTTTGACTTCACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259792 lncRNA downstream 75987 34068280 ~ 34068460 (-) True G1976821
TU2259225 lncRNA downstream 78518 34065407 ~ 34065929 (-) True G1976333
TU2259223 lncRNA downstream 78908 34064699 ~ 34065539 (-) False G1976333
TU2259221 lncRNA downstream 80231 34063919 ~ 34064216 (-) True G1976331
TU2259197 lncRNA downstream 94278 34049926 ~ 34050169 (-) True G1976307
TU2259847 lncRNA upstream 21016 34166621 ~ 34167074 (-) True G1976866
TU2259853 lncRNA upstream 35638 34181243 ~ 34181870 (-) True G1976872
TU2259877 lncRNA upstream 81099 34226704 ~ 34227635 (-) True G1976896
TU2259878 lncRNA upstream 82253 34227858 ~ 34228499 (-) True G1976897
TU2259882 lncRNA upstream 94397 34240002 ~ 34246788 (-) True G1976901
XM_036962531.1 mRNA downstream 26600 34073214 ~ 34117847 (-) True mpp5a
XM_021585270.2 mRNA downstream 71838 34069156 ~ 34072609 (-) True eif2s1a
LOC110504228 mRNA downstream 84872 34053551 ~ 34059575 (-) True LOC110504228
XM_021585269.2 mRNA downstream 127475 33989997 ~ 34016972 (-) True LOC110505815
XM_036962340.1 mRNA downstream 163406 33931665 ~ 33981041 (-) False LOC110505813
XR_005039492.1 mRNA upstream 21855 34167460 ~ 34168258 (-) True LOC118944181
XM_036962383.1 mRNA upstream 146863 34292468 ~ 34442343 (-) False LOC110504230
XM_036962384.1 mRNA upstream 146863 34292468 ~ 34442343 (-) False LOC110504230
XM_036962730.1 mRNA upstream 553564 34699169 ~ 34700207 (-) True pth2
XM_036962475.1 mRNA upstream 570123 34715728 ~ 34739799 (-) False rin3
TU2258576 other downstream 587636 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 820122 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2157563 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2525948 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2559401 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 332015 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 729780 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 824547 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 829188 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 881495 35027100 ~ 35100978 (-) False G1977346

Expression Profile