RNA id: TU2259878


Basic Information

Item Value
RNA id TU2259878
length 514
lncRNA type intronic
GC content 0.51
exon number 2
gene id G1976897
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34227858 ~ 34228499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATCCTCTGTCCTCCGGCGTAGTGCAGGGACTCGAGCAGGCAGGGACTCGAGCAGGCAGGGACTCGAGCAGGCAGGGACTCGAGCAGGCAGGGACTCGAACAGGCAGGGACTCGAACCTTGGATCCAGTGCAATAGATCTATGAACGTAGTCCTGTACATTAGGGGGGTATCTGGGGTTCAGGTCCTCTCTAATGGCAGCCTTGACATCTCTAGTGATGGTGCTGTCTTCCTCACTTGGGGCCATGGATTGCAGAATCCTTGTTTTCAGAGGTAGGATCATGGACACAGACAGTGCAGTTTCAGTGCTCAGTAGGTTTGTAACTGTTTTGTGGGGTTTGATCACCTGGAGGACCTCCTCTGCTACTTTCACATCATCATCAGACAAGGTGACGATGTCTTTATGTTTTTTCAGGGTCTTGTCTGTCAGTGCAGAGTATACAGCTGTCTGCTGCTCAAGATAGAGCTCCAACATGTCAAAGTGAATTTCCATGTTGTGACATGGTGTATGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259877 lncRNA downstream 223 34226704 ~ 34227635 (-) True G1976896
TU2259853 lncRNA downstream 45988 34181243 ~ 34181870 (-) True G1976872
TU2259847 lncRNA downstream 60784 34166621 ~ 34167074 (-) True G1976866
TU2259832 lncRNA downstream 82253 34144447 ~ 34145605 (-) True G1976857
TU2259792 lncRNA downstream 159398 34068280 ~ 34068460 (-) True G1976821
TU2259882 lncRNA upstream 11503 34240002 ~ 34246788 (-) True G1976901
TU2259896 lncRNA upstream 37551 34266050 ~ 34266253 (-) True G1976915
TU2259944 lncRNA upstream 59890 34288389 ~ 34288718 (-) True G1976932
TU2259906 lncRNA upstream 99473 34327972 ~ 34442318 (-) False LOC110504230
TU2259910 lncRNA upstream 99473 34327972 ~ 34442318 (-) True LOC110504230
XR_005039492.1 mRNA downstream 59600 34167460 ~ 34168258 (-) True LOC118944181
XM_036962531.1 mRNA downstream 110011 34073214 ~ 34117847 (-) True mpp5a
XM_021585270.2 mRNA downstream 155249 34069156 ~ 34072609 (-) True eif2s1a
LOC110504228 mRNA downstream 168283 34053551 ~ 34059575 (-) True LOC110504228
XM_021585269.2 mRNA downstream 210886 33989997 ~ 34016972 (-) True LOC110505815
XM_036962383.1 mRNA upstream 63969 34292468 ~ 34442343 (-) False LOC110504230
XM_036962384.1 mRNA upstream 63969 34292468 ~ 34442343 (-) False LOC110504230
XM_036962730.1 mRNA upstream 470670 34699169 ~ 34700207 (-) True pth2
XM_036962475.1 mRNA upstream 487229 34715728 ~ 34739799 (-) False rin3
XM_036962474.1 mRNA upstream 487229 34715728 ~ 34739802 (-) False rin3
TU2258576 other downstream 671047 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 903533 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2240974 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2609359 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2642812 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 249121 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 646886 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 741653 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 746294 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 798601 35027100 ~ 35100978 (-) False G1977346

Expression Profile