RNA id: TU2260072


Basic Information

Item Value
RNA id TU2260072
length 939
RNA type TUCP
GC content 0.48
exon number 1
gene id G1977046
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34477620 ~ 34478809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatttcacatgactgggaatacagatatgcatctgttggtcacaaatactttttaaataaaagacgtggatcagaaaaccagtcattatctggtgtgaccaccatttacatCATGCAGCGTCACACATCTCCTTCGGATAGAGTTGAACAGGCTATTGATTGTTGCCTGTGGAAccttgtcccactcctcttcaatggttgtgcaaagttgatggatattggtgggaactgtacatgtcgatccagagcatcccaaacatgctcaatgggtgacatgtctggtgagtatgcgaCATGAAGCagtgcattatcatactgaaagATGACGTGAAGGCAGAGGATGAATGGCCtctggatctcgtcacggtatctcgtCATGtttaaattgccatcaataaaatgcaattgcgttCCTTGTCCGTAGCTtacgcctgcccataccataaccccactgccactatTGGGCATTCTgatcacaacgttgacatcagcaaatcgcacacccacatgacgccatacacgcggtctgccatctgcccggtacagctgaaaccgggattcatccatgaagagcacacctctccagcgtgccagtgaaggtgagcatttacccactgaagtcagttaggATGCCGAACAGCAGTAAGATCAAGATGaggagcacgcagatgagcttccctgagatggtttctgacagtttgtgcagaaattcttcagttgtacaaaccctgtttcatcagctgtccgggtggctggtctcagacgatcccacaggtgaagaagcagaatatggaggtcctgggctggcgtggttacacctgTCTGCGGTTGTGATGCCGGTCGGACGTAGTGCCAATTTCTCTAAAACgtttgaggcggcttatggtagagaaatgaacgttaaattatctggcaatcactctggtggacattcctgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2260054 lncRNA downstream 21819 34454314 ~ 34455801 (-) True G1977030
TU2260053 lncRNA downstream 21869 34454314 ~ 34455751 (-) False G1977030
TU2260044 lncRNA downstream 31285 34445779 ~ 34446335 (-) True G1977027
TU2259906 lncRNA downstream 35302 34327972 ~ 34442318 (-) False LOC110504230
TU2259910 lncRNA downstream 35302 34327972 ~ 34442318 (-) True LOC110504230
TU2260078 lncRNA upstream 655 34479213 ~ 34479649 (-) True G1977048
TU2260079 lncRNA upstream 1481 34480039 ~ 34480322 (-) True G1977049
TU2260080 lncRNA upstream 2093 34480651 ~ 34481106 (-) True G1977050
TU2260121 lncRNA upstream 76015 34554573 ~ 34563512 (-) False G1977090
TU2260120 lncRNA upstream 84361 34562919 ~ 34563512 (-) False G1977090
XM_036962383.1 mRNA downstream 35277 34292468 ~ 34442343 (-) False LOC110504230
XM_036962384.1 mRNA downstream 35277 34292468 ~ 34442343 (-) False LOC110504230
XR_005039491.1 mRNA downstream 242075 34120446 ~ 34235545 (-) True gphna
XM_036962399.1 mRNA downstream 242088 34118176 ~ 34235532 (-) False gphna
XM_036962402.1 mRNA downstream 242089 34118176 ~ 34235531 (-) False gphna
XM_036962730.1 mRNA upstream 220611 34699169 ~ 34700207 (-) True pth2
XM_036962475.1 mRNA upstream 237170 34715728 ~ 34739799 (-) False rin3
XM_036962474.1 mRNA upstream 237170 34715728 ~ 34739802 (-) False rin3
XM_036962963.1 mRNA upstream 296326 34774884 ~ 34893972 (-) False LOC110505825
XM_036962964.1 mRNA upstream 296326 34774884 ~ 34893972 (-) True LOC110505825
TU2258576 other downstream 920809 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 1153295 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2490736 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2859121 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2892574 31584540 ~ 31585046 (-) True G1973793
TU2260263 other upstream 396827 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 491594 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 496235 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 548542 35027100 ~ 35100978 (-) False G1977346
TU2260401 other upstream 548542 35027100 ~ 35100978 (-) False G1977346

Expression Profile