RNA id: TU2259546


Basic Information

Item Value
RNA id TU2259546
length 255
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G1976599
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34523604 ~ 34526477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctattagcagtgctgtgtgttcctctattagcagtgctgtgtgttcctctcctcctcaggtgcttttagcagtgctgtgttcctctcctcctcaggtgctattagcagtgctgtgtgttcctctattagcagtgctgtgtgttcctcctcctcaggtgctattagcagtgctgtgtgttcctctcctcctcagGTGCTTttagcagtgctgtgtgttcctctcctcctcaggtgctattagcagtgctgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259528 lncRNA upstream 30445 34492344 ~ 34493159 (+) True G1976582
TU2259526 lncRNA upstream 35242 34488119 ~ 34488362 (+) True G1976580
TU2259523 lncRNA upstream 41005 34482325 ~ 34482599 (+) True G1976577
TU2259491 lncRNA upstream 67881 34454335 ~ 34455723 (+) False G1976546
TU2259556 lncRNA downstream 13879 34540356 ~ 34540896 (+) True G1976609
TU2259558 lncRNA downstream 15136 34541613 ~ 34541852 (+) True G1976611
TU2259564 lncRNA downstream 23776 34550253 ~ 34550574 (+) True G1976617
TU2259565 lncRNA downstream 24165 34550642 ~ 34550844 (+) True G1976618
TU2259570 lncRNA downstream 39248 34565725 ~ 34566222 (+) True G1976623
XM_021585275.2 mRNA upstream 46457 34457515 ~ 34477147 (+) True tedc1
XM_021585273.2 mRNA upstream 71017 34446701 ~ 34452587 (+) False dnal1
XM_036962961.1 mRNA upstream 71017 34447235 ~ 34452587 (+) False dnal1
XR_002470591.2 mRNA upstream 1234996 33282986 ~ 33288608 (+) False LOC110504337
XM_036962727.1 mRNA upstream 1380694 33124567 ~ 33142910 (+) True LOC118944263
XM_021585277.2 mRNA downstream 155255 34681732 ~ 34685739 (+) True tmem121aa
XM_021585279.2 mRNA downstream 224407 34750884 ~ 34771020 (+) True LOC110505824
XM_036963044.1 mRNA downstream 486218 35012695 ~ 35044704 (+) False LOC110505830
XM_036963043.1 mRNA downstream 486239 35012716 ~ 35056944 (+) False LOC110505830
XM_036963041.1 mRNA downstream 486254 35012731 ~ 35056944 (+) False LOC110505830
TU2259521 other upstream 41683 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 42325 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 42707 34480030 ~ 34480897 (+) True G1976573
TU2259487 other upstream 70763 34448467 ~ 34452841 (+) True dnal1
TU2258898 other upstream 683526 33836113 ~ 33840078 (+) False G1976067
TU2259636 other downstream 175503 34701980 ~ 34703894 (+) True G1976680
TU2259645 other downstream 203550 34730027 ~ 34731311 (+) True G1976689
TU2261218 other downstream 1500056 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 1862794 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 2691784 37218261 ~ 37222036 (+) True LOC110504241

Expression Profile