RNA id: TU2259645



Basic Information


Item Value
RNA id TU2259645
length 1189
RNA type TUCP
GC content 0.58
exon number 2
gene id G1976689
representative True

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34730027 ~ 34731311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGCATGAGTGTGGTCCTCTCCTGGGCCATACCCAGCTGCAACCACACCGGGCAAGTTTTGATCAGTTTCTCCAGGATACTGATGCTAGGTCGTGGGGCTGTGGCTTGGGTTGGAGATGGGGCTGTCGATGAGGCCGAAGCTGGGGCGGGCATGGGAGCTAGAGGGACTAGTGGGGAGggtagaggggaagaggaggacttCATGGATGGAAGTGGGGGTCTGgggagagctggagaggaggGTTTGGCTTTCGAGTGAGGGTGAGGTATGGGGGGTCTCGGCTGGGGTGGACCAGAGAGTTTTCGAGGTGCTGGGGGTCTAGGAAGAGGGGGTGAGGAGATCTTTGAGAAAGGAGGAACACGGGGAGACGGAGGTACGGAGGGTTTTGAGAGAGGATGAATGGGGGGAGTGGACATTGGGGGTTTTGCTATAGGAGGTACGTGGGGAGAAGAGATAGGAAGTGAGGAGGGTTTTGAGATGGAAGTTACAGTGGGAGCAGAGATGAGCATAGATGAGGGCTTTGGGAACGGCTGAGATGAAGGTGCTGGTAGGGTTAGTTCTGAAGAGGAGACTGGGAGCTCTGGGACTGAAGAGGACATAtgtaaggggaggggaggagcagagaCATCCAGGATGTCAGGAAGGTGGGGTGTAGAGGGCTCTGAGACTTGAGGGTGTACTggtgtggggaggggaggagtagaTCTCTCTGGGACATCAGGTACCAGGGGTGTGGGGAGTGGGGGAGTGGAGGTCTCTAAGACTTGAGGGGGTAGTGATGTGACAAGGGTGGAAGTAGAGATAGCCGGGACATCAAGGACTAGGGATAAGGGGGGAGTGCATTCCTTAGGGACAGCGGCATTGGGGACATCAGTTGCGTCAGTGGCATCAACGGCCAAGTCAATTTGAGAAGGGAGTGGTTCAGAAGCTGAATGGAGGGGCGGTGTGggtgaggagggtgaggagggtatgaggggtgaagggaggaggggggaggagtccAGGTAGACAGGTGGAGTTGGGTCAGTTGGGTCATGGGGAGTTGGGTCAGGGGCTGGGGAGGGTTTGGAGGGGAGAGTCGGAGGAGCCATCAGGGGTGGTCCTGAGGAGAGGGCAGGTCTGGGAGGGGGGAATAGTACTGTTGATCCTGAAGATAAGGCAGGGGTGAGGGGGGGTCTAGGTGGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2259643 lncRNA upstream 3380 34726305 ~ 34726647 (+) True G1976687
TU2259592 lncRNA upstream 3957 34724937 ~ 34726070 (+) True G1976643
TU2259641 lncRNA upstream 7245 34722529 ~ 34722782 (+) True G1976685
TU2259595 lncRNA upstream 8283 34718981 ~ 34721744 (+) True G1976644
TU2259591 lncRNA upstream 11466 34715730 ~ 34718561 (+) True G1976642
TU2259644 lncRNA downstream 7978 34739289 ~ 34739687 (+) True G1976688
TU2259650 lncRNA downstream 24998 34756309 ~ 34772357 (+) True G1976694
TU2259718 lncRNA downstream 93218 34824529 ~ 34825222 (+) True G1976753
TU2259722 lncRNA downstream 94013 34825324 ~ 34832537 (+) True G1976755
TU2259744 lncRNA downstream 143931 34875242 ~ 34876230 (+) True G1976775
XM_021585277.2 mRNA upstream 44288 34681732 ~ 34685739 (+) True tmem121aa
XM_021585275.2 mRNA upstream 252880 34457515 ~ 34477147 (+) True tedc1
XM_021585273.2 mRNA upstream 277440 34446701 ~ 34452587 (+) False dnal1
XM_036962961.1 mRNA upstream 277440 34447235 ~ 34452587 (+) False dnal1
XR_002470591.2 mRNA upstream 1441419 33282986 ~ 33288608 (+) False LOC110504337
XM_021585279.2 mRNA downstream 19573 34750884 ~ 34771020 (+) True LOC110505824
XM_036963044.1 mRNA downstream 281384 35012695 ~ 35044704 (+) False LOC110505830
XM_036963043.1 mRNA downstream 281405 35012716 ~ 35056944 (+) False LOC110505830
XM_036963041.1 mRNA downstream 281420 35012731 ~ 35056944 (+) False LOC110505830
XM_036963042.1 mRNA downstream 283423 35014734 ~ 35056944 (+) True LOC110505830
TU2259636 other upstream 26133 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 248106 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 248748 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 249130 34480030 ~ 34480897 (+) True G1976573
TU2259487 other upstream 277186 34448467 ~ 34452841 (+) True dnal1
TU2261218 other downstream 1295222 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 1657960 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 2486950 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 2533469 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 2989823 37721134 ~ 37729904 (+) False G1980026

Expression Profile