RNA id: TU2259746


Basic Information

Item Value
RNA id TU2259746
length 1392
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1976777
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34896060 ~ 34897451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACTTACAAAAGTATGGATCAAAATAAAACTCAGTACAAATAGGTTGTCAGTTAACTAGGCTACTTCATTGTTCTTTCCCTGTGGAAACTAAACTctacaaaaaaagaaacatcctgtgtaaatatttgtatgaacataacaagaatcATCaaatgagacataaactgaacaagttccacagacatgtgactaacagaaatagaataatgtgtccctgaacaaaggtggggtcaaaatcaaaagtaacagtcagtatctggtgtggccaccagctgcattaggtactgcagtgcatctcctcctcatggactgcaccagatttgccagttctgctgtgagatgttaccccactcttccaccaaggcacctacaagttcccggacatttctggggggaatggccttagctctcaccctccgatccaataggtcccagacgtgctcaatgggattgagatccgggctcttcgctggccatggtagaacactgacattcctgtcttgcaggaaatcactcacagaacgagcaatatggctggtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaggggtaccacatgagggaggaggatgtcttccctgtaacgcacaacgTTGATattgcctgcaataacaacaagctcagtctgatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaagtcgatcccgctccagagtacgggcctcggtgtaatgctcattccttcgacgataaacacgaatccaaccatcacccctggtgagacaaaaccacgactcgtcatcTAAGAGCACcttttgtcagtcctgtctggaacagcgatggtgggtttgtgcccatgggcgacgttgttgcaggtgatgtctggtgaggacctgcacTACAATAGGCCTAAAAGCCCTcattccagcctctctcagcctattgcgaacagtctgagcactgatggagggattatgcattcctggtgtaactcgggcagttgttgttgccatcctgtacctgtgatgttcggatgtaccgatcctgtgcaggtgttgttacaaggGGTCTGCCattgcaaggacgatcagctgtccgacctgtctccctgtagtgctgtcttaggcgtctcatagtacagatattgcaatttattgccctggccatatctgcagtcctcatgcctccttgcagcatacctaaggcacgttcacaccgatgagcagggaccctgggcatctttttattggtgtttttcagagtcagtagaaaggcctctttagtgtcctaagttttcgtaACTGTGCCTtatttgcctaccgtctgtaagctgttagtgtcttaacaaccgttccacaggtgcatgttgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259744 lncRNA upstream 19830 34875242 ~ 34876230 (+) True G1976775
TU2259722 lncRNA upstream 63523 34825324 ~ 34832537 (+) True G1976755
TU2259718 lncRNA upstream 70838 34824529 ~ 34825222 (+) True G1976753
TU2259650 lncRNA upstream 123703 34756309 ~ 34772357 (+) True G1976694
TU2259644 lncRNA upstream 156373 34739289 ~ 34739687 (+) True G1976688
TU2259747 lncRNA downstream 880 34898331 ~ 34898709 (+) True G1976778
TU2259762 lncRNA downstream 2437 34899888 ~ 34900092 (+) True G1976793
TU2259763 lncRNA downstream 4347 34901798 ~ 34965265 (+) True G1976794
TU2259777 lncRNA downstream 40372 34937823 ~ 34938280 (+) True G1976808
TU2260296 lncRNA downstream 68773 34966224 ~ 34967821 (+) True G1977256
XM_021585279.2 mRNA upstream 125040 34750884 ~ 34771020 (+) True LOC110505824
XM_021585277.2 mRNA upstream 210321 34681732 ~ 34685739 (+) True tmem121aa
XM_021585275.2 mRNA upstream 418913 34457515 ~ 34477147 (+) True tedc1
XM_021585273.2 mRNA upstream 443473 34446701 ~ 34452587 (+) False dnal1
XM_036963044.1 mRNA downstream 115244 35012695 ~ 35044704 (+) False LOC110505830
XM_036963043.1 mRNA downstream 115265 35012716 ~ 35056944 (+) False LOC110505830
XM_036963041.1 mRNA downstream 115280 35012731 ~ 35056944 (+) False LOC110505830
XM_036963042.1 mRNA downstream 117283 35014734 ~ 35056944 (+) True LOC110505830
NM_001165059.1 mRNA downstream 191243 35088694 ~ 35100987 (+) False LOC100305155
TU2259645 other upstream 164749 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 192166 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 414139 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 414781 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 415163 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 1129082 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 1491820 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 2320810 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 2367329 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 2823683 37721134 ~ 37729904 (+) False G1980026

Expression Profile