RNA id: TU2261066


Basic Information

Item Value
RNA id TU2261066
length 218
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G1977953
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35746933 ~ 35747402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctctgagagagagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctagccccccgacacataaactactgcagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261065 lncRNA upstream 588 35746075 ~ 35746345 (+) True G1977952
TU2261062 lncRNA upstream 9560 35736977 ~ 35737373 (+) True G1977949
TU2261061 lncRNA upstream 11014 35735594 ~ 35735919 (+) True G1977948
TU2261060 lncRNA upstream 16393 35729982 ~ 35730540 (+) True G1977947
TU2261053 lncRNA upstream 24661 35722035 ~ 35722272 (+) True G1977941
TU2261094 lncRNA downstream 59215 35806617 ~ 35806959 (+) True G1977980
TU2261097 lncRNA downstream 62016 35809418 ~ 35809646 (+) True G1977983
TU2261100 lncRNA downstream 68413 35815815 ~ 35816016 (+) True G1977986
TU2261102 lncRNA downstream 71324 35818726 ~ 35818934 (+) True G1977988
TU2261178 lncRNA downstream 176049 35923451 ~ 35923730 (+) True LOC118944336
XM_036962700.1 mRNA upstream 135232 35539797 ~ 35611701 (+) False LOC110504234
XM_036962702.1 mRNA upstream 135232 35539797 ~ 35611701 (+) False LOC110504234
XM_036962703.1 mRNA upstream 135232 35539797 ~ 35611701 (+) False LOC110504234
XM_036962701.1 mRNA upstream 135232 35547037 ~ 35611701 (+) False LOC110504234
XM_036962929.1 mRNA upstream 457769 35249319 ~ 35289164 (+) False LOC110505833
XM_036962865.1 mRNA downstream 117168 35864570 ~ 35866787 (+) True LOC110504235
XM_021585292.2 mRNA downstream 129041 35876443 ~ 35880427 (+) True LOC110505837
XR_005039580.1 mRNA downstream 173473 35920875 ~ 35923934 (+) False LOC118944336
LOC110504338 mRNA downstream 347067 36094469 ~ 36097074 (+) True LOC110504338
XM_021585298.2 mRNA downstream 353882 36101284 ~ 36112211 (+) True LOC110505842
TU2259645 other upstream 1015622 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1043039 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1265012 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1265654 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 1266036 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 279131 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 641869 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1470859 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1517378 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1973732 37721134 ~ 37729904 (+) False G1980026

Expression Profile