RNA id: TU2261239


Basic Information

Item Value
RNA id TU2261239
length 284
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1978097
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36000991 ~ 36001274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcaaaggcacttagatCTTTCgtctttcccattcaccttctgaatggcacacacacacaatccatgtctcaaggcttaaaaatccttatttaacctgtctccttcccctcatctacactgattgaagtgaatttaacaggtggcatcaacaagggatcatagctttcatctggattcacctggtcagtctatatcatattcctaatgttttgtccacccAGTGTAAATTGTAATAGGTTATAGAGTAAAACATGTAGTCACCAATTCAAGGTAAATCTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261238 lncRNA upstream 1810 35998888 ~ 35999181 (+) True G1978096
TU2261236 lncRNA upstream 5195 35993931 ~ 35995796 (+) True G1978094
TU2261224 lncRNA upstream 20850 35979931 ~ 35980141 (+) True G1978085
TU2261220 lncRNA upstream 34269 35966406 ~ 35966722 (+) True G1978082
TU2261212 lncRNA upstream 44926 35955852 ~ 35956065 (+) True G1978074
TU2261240 lncRNA downstream 1781 36003055 ~ 36003406 (+) True G1978098
TU2261243 lncRNA downstream 14668 36015942 ~ 36019959 (+) True G1978101
TU2261245 lncRNA downstream 14988 36016262 ~ 36017096 (+) False G1978102
TU2261250 lncRNA downstream 15899 36017173 ~ 36020287 (+) False G1978102
TU2261251 lncRNA downstream 16827 36018101 ~ 36018831 (+) True G1978102
XR_005039580.1 mRNA upstream 77057 35920875 ~ 35923934 (+) False LOC118944336
XM_021585292.2 mRNA upstream 120564 35876443 ~ 35880427 (+) True LOC110505837
XM_036962865.1 mRNA upstream 134204 35864570 ~ 35866787 (+) True LOC110504235
XM_036962703.1 mRNA upstream 389290 35539797 ~ 35611701 (+) False LOC110504234
LOC110504338 mRNA downstream 93195 36094469 ~ 36097074 (+) True LOC110504338
XM_021585298.2 mRNA downstream 100010 36101284 ~ 36112211 (+) True LOC110505842
XM_021585297.2 mRNA downstream 111083 36112357 ~ 36120256 (+) True LOC110505840
XR_005039523.1 mRNA downstream 119116 36120390 ~ 36142702 (+) False LOC110505839
XM_021585293.2 mRNA downstream 119116 36120390 ~ 36150603 (+) False LOC110505839
TU2259645 other upstream 1269680 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1297097 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1519070 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1519712 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 1520094 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 25259 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 387997 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1216987 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1263506 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1719860 37721134 ~ 37729904 (+) False G1980026

Expression Profile