RNA id: TU2261251


Basic Information

Item Value
RNA id TU2261251
length 201
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G1978102
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36016262 ~ 36020287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgtcattccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctttctctccgtcactccgtctttctctctccgtcactccgtctttcACTCAGTCactccgtcactccgtctttcACTCAGTCACTCCGTCTTTCACTCagtcactccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261245 lncRNA upstream 1005 36016262 ~ 36017096 (+) False G1978102
TU2261240 lncRNA upstream 14695 36003055 ~ 36003406 (+) True G1978098
TU2261239 lncRNA upstream 16827 36000991 ~ 36001274 (+) True G1978097
TU2261238 lncRNA upstream 18920 35998888 ~ 35999181 (+) True G1978096
TU2261236 lncRNA upstream 22305 35993931 ~ 35995796 (+) True G1978094
TU2261217 lncRNA downstream 2977 36021808 ~ 36025038 (+) True G1978079
TU2261219 lncRNA downstream 9282 36028113 ~ 36028642 (+) True G1978081
TU2261330 lncRNA downstream 201925 36220756 ~ 36221108 (+) True G1978181
TU2261405 lncRNA downstream 340873 36359704 ~ 36359947 (+) True G1978249
TU2261450 lncRNA downstream 415306 36434137 ~ 36434672 (+) True G1978280
XR_005039580.1 mRNA upstream 94167 35920875 ~ 35923934 (+) False LOC118944336
XM_021585292.2 mRNA upstream 137674 35876443 ~ 35880427 (+) True LOC110505837
XM_036962865.1 mRNA upstream 151314 35864570 ~ 35866787 (+) True LOC110504235
XM_036962703.1 mRNA upstream 406400 35539797 ~ 35611701 (+) False LOC110504234
LOC110504338 mRNA downstream 75638 36094469 ~ 36097074 (+) True LOC110504338
XM_021585298.2 mRNA downstream 82453 36101284 ~ 36112211 (+) True LOC110505842
XM_021585297.2 mRNA downstream 93526 36112357 ~ 36120256 (+) True LOC110505840
XR_005039523.1 mRNA downstream 101559 36120390 ~ 36142702 (+) False LOC110505839
XM_021585293.2 mRNA downstream 101559 36120390 ~ 36150603 (+) False LOC110505839
TU2259645 other upstream 1286790 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1314207 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1536180 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1536822 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 1537204 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 7702 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 370440 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1199430 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1245949 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1702303 37721134 ~ 37729904 (+) False G1980026

Expression Profile