RNA id: TU2261330


Basic Information

Item Value
RNA id TU2261330
length 243
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1978181
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36220756 ~ 36221108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggttgaataataataaggcagaacagttgaaactggagcagcagcacggtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctccgagagagagaaagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261219 lncRNA upstream 192114 36028113 ~ 36028642 (+) True G1978081
TU2261217 lncRNA upstream 195718 36021808 ~ 36025038 (+) True G1978079
TU2261250 lncRNA upstream 200469 36017173 ~ 36020287 (+) False G1978102
TU2261243 lncRNA upstream 200797 36015942 ~ 36019959 (+) True G1978101
TU2261405 lncRNA downstream 138596 36359704 ~ 36359947 (+) True G1978249
TU2261450 lncRNA downstream 213029 36434137 ~ 36434672 (+) True G1978280
TU2261501 lncRNA downstream 270943 36492051 ~ 36492958 (+) True G1978312
TU2261563 lncRNA downstream 486391 36707499 ~ 36708827 (+) True G1978368
TU2261597 lncRNA downstream 518709 36739817 ~ 36741984 (+) False G1978398
XM_036962289.1 mRNA upstream 8011 36151415 ~ 36212745 (+) False LOC110505843
XM_036962290.1 mRNA upstream 8011 36151416 ~ 36212745 (+) False LOC110505843
XM_036962287.1 mRNA upstream 8011 36151418 ~ 36212745 (+) False LOC110505843
XM_036962286.1 mRNA upstream 8011 36151419 ~ 36212745 (+) False LOC110505843
XM_036962300.1 mRNA upstream 8011 36151421 ~ 36212745 (+) False LOC110505843
XM_036962604.1 mRNA downstream 1513 36222621 ~ 36281619 (+) False LOC110505844
XM_036962603.1 mRNA downstream 1513 36222621 ~ 36282138 (+) False LOC110505844
XM_036962605.1 mRNA downstream 1513 36222621 ~ 36282138 (+) False LOC110505844
XM_036962606.1 mRNA downstream 1513 36222621 ~ 36282138 (+) False LOC110505844
XM_036962607.1 mRNA downstream 1513 36222621 ~ 36282138 (+) False LOC110505844
TU2261218 other upstream 193019 36026533 ~ 36027737 (+) True G1978080
TU2259645 other upstream 1489445 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1516862 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1738835 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1739477 34480904 ~ 34481279 (+) True G1976574
TU2261421 other downstream 168163 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 997153 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1043672 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1500026 37721134 ~ 37729904 (+) False G1980026
TU2264448 other downstream 2307499 38528607 ~ 38529105 (+) True G1980792

Expression Profile