RNA id: TU2262790


Basic Information

Item Value
RNA id TU2262790
length 471
lncRNA type read_through
GC content 0.48
exon number 3
gene id G1979385
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36542158 ~ 36544636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacagggtatggtagtaggtgtctttgaacggggtatggtagtaggtgcctttgaacagggtatggtagtaggtgcctttgaacagggtatggtagtaggtgtctttgaacggggtatggtagtaggtgcctttgaacagggtatggtagtaggtgtctttgaacgggggtatggtagtaggtgcctttgaacaggggtatggtagtaggtgtctttgaacagggtatggtagtaggtgtctttgaacggggtatggtagtaggtgcctttgaacagggtatggtagtaggtgtctttgaacaggggtatggtagtaggtgtctttgaacagggtatggtagtaggtgtctttgaacagggtatggtagtaggtgtctttgaacagggtatggtagtaggtgtctttgaacagggtatggtagtaggtgcctttgaacgggggtatggtagtaggtgtctttgaacagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2262748 lncRNA downstream 42997 36498883 ~ 36499161 (-) True G1979345
TU2262628 lncRNA downstream 145879 36336480 ~ 36396279 (-) True G1979258
TU2262663 lncRNA downstream 155531 36386222 ~ 36386627 (-) True G1979285
TU2262660 lncRNA downstream 155614 36386092 ~ 36386544 (-) False G1979285
TU2262659 lncRNA downstream 155614 36386222 ~ 36386544 (-) False G1979285
TU2262834 lncRNA upstream 40609 36585245 ~ 36591872 (-) True G1979420
TU2262844 lncRNA upstream 79263 36623899 ~ 36627233 (-) True G1979428
TU2262902 lncRNA upstream 154222 36698858 ~ 36699135 (-) True G1979473
TU2262889 lncRNA upstream 160889 36705525 ~ 36709916 (-) False LOC118944239
TU2262892 lncRNA upstream 160889 36705525 ~ 36712775 (-) False LOC118944239
XM_021585307.2 mRNA downstream 102360 36427772 ~ 36439798 (-) False tulp4b
XM_021585313.2 mRNA upstream 113005 36657641 ~ 36673264 (-) True LOC110505855
XR_005039533.1 mRNA upstream 160864 36705500 ~ 36711006 (-) False LOC118944239
XM_036962624.1 mRNA upstream 175303 36719939 ~ 36737917 (-) False sash1b
XM_021585319.2 mRNA upstream 175303 36719939 ~ 36821245 (-) False sash1b
XM_021585321.2 mRNA upstream 175303 36719939 ~ 36821245 (-) False sash1b
TU2262632 other downstream 195103 36345574 ~ 36347055 (-) False LOC110504237
TU2262487 other downstream 325928 36211946 ~ 36216230 (-) True G1979142
TU2260400 other downstream 1441180 35027100 ~ 35100978 (-) False G1977346
TU2263072 other upstream 420538 36965174 ~ 36965719 (-) True G1979607
TU2263320 other upstream 793110 37337746 ~ 37338882 (-) True G1979813
TU2264229 other upstream 1658805 38203441 ~ 38204163 (-) True G1980619
TU2265398 other upstream 2491651 39036287 ~ 39038944 (-) False G1981678
TU2265399 other upstream 2491651 39036287 ~ 39038717 (-) True G1981678

Expression Profile