RNA id: TU2269080


Basic Information

Item Value
RNA id TU2269080
length 209
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1984649
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43245818 ~ 43246026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatactgaaccttaccttgacctgatatactgaaccttaccttcacctgatatactgaaccttaccatcacctgatatactgaaccttaccatcacctgatatactgaaccttaccttgacctgatatactgaaccttaccttcacctgatatactgaaccttaccttcacctgatatactgaaccttaccttcacctgatatactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2269058 lncRNA upstream 57374 43186204 ~ 43188444 (+) True G1984627
TU2268827 lncRNA upstream 72653 43171407 ~ 43173165 (+) True G1984430
TU2269055 lncRNA upstream 75733 43169774 ~ 43170085 (+) True G1984624
TU2269053 lncRNA upstream 80028 43165496 ~ 43165790 (+) True G1984622
TU2269044 lncRNA upstream 89893 43155710 ~ 43155925 (+) True G1984615
TU2269089 lncRNA downstream 1321 43247347 ~ 43274418 (+) True G1984651
TU2269094 lncRNA downstream 13784 43259810 ~ 43294386 (+) False G1984654
TU2269092 lncRNA downstream 36659 43282685 ~ 43294386 (+) True G1984654
TU2269083 lncRNA downstream 51617 43297643 ~ 43305878 (+) True G1984650
TU2269110 lncRNA downstream 66606 43312632 ~ 43313011 (+) True G1984666
XM_036962599.1 mRNA upstream 93253 43110612 ~ 43152565 (+) False LOC110506001
XM_036962600.1 mRNA upstream 93253 43110612 ~ 43152565 (+) True LOC110506001
XM_036962598.1 mRNA upstream 171889 43060008 ~ 43073929 (+) True vti1b
XM_036962337.1 mRNA upstream 206631 42918937 ~ 43039187 (+) False zfyve26
XM_036962272.1 mRNA downstream 130068 43376094 ~ 43395316 (+) True LOC110505947
XM_021585425.2 mRNA downstream 164929 43410955 ~ 43436311 (+) False plekhd1
XM_021585426.2 mRNA downstream 175691 43421717 ~ 43436311 (+) True plekhd1
XM_036962745.1 mRNA downstream 223669 43469695 ~ 43470614 (+) True LOC118944278
XR_005039591.1 mRNA downstream 470088 43716114 ~ 43716793 (+) True LOC118944350
TU2268828 other upstream 202500 43042681 ~ 43043318 (+) True G1984431
TU2268994 other upstream 270544 42967416 ~ 42975274 (+) False G1984581
TU2268996 other upstream 270544 42967416 ~ 42975274 (+) True G1984581
TU2268800 other upstream 517869 42722975 ~ 42727949 (+) False LOC110505989
TU2268690 other upstream 791995 42419160 ~ 42453823 (+) True cn112
TU2269253 other downstream 225530 43471556 ~ 43472009 (+) True G1984764
TU2269294 other downstream 328017 43574043 ~ 43574613 (+) True G1984797
TU2269300 other downstream 367522 43613548 ~ 43635501 (+) False G1984803
TU2269305 other downstream 381966 43627992 ~ 43628808 (+) True G1984807
TU2269309 other downstream 387806 43633832 ~ 43634426 (+) True G1984810

Expression Profile