RNA id: TCONS_00005100


Basic Information

Item Value
RNA id TCONS_00005100
length 2293
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_002752
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22789319 ~ 22803854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgaattagcatgttgctagtatgtttatagtataaattagcatgatgctagtatgtttatagtatgaattagcatgatgctagtatgattagtatgccGTTAATATGTTTTGAGCATGAATctgtatgttgttagtatgtctaatgtaaagtcaatggcaatTTGTTTCAATGGACGTCTATGGGAGAGTTGCTTTGATGCTgtcagtggttgctagggtgtggctggtaagttgaaaggtcattgATGATTGAGAGATTTGTAGTCTGATttaaatgagcccaaccttaagtctgtatgacagtctggcacaAAGGTATGAGGTCACAaattttggtccaatgttaagtcaaacAGTTTTCGAAAAACTGTTGGAAAAGATGTAGCAACCTGAGGAGGTTGAAGGTATGGTATATGTTTAGTGGTTGTAGTATTAATGGTCTAGAAGGAGATGCATGTAGAAATCAAATTactctcagaagaagaagaagaacacgtttatgtagtataacagtatgttacctttctcaagccaccataaatgCAATGATAATGTACAATACATAATGTATATACTGTGCTTTGCTATTAAAATCCTGAAATACATGAAAATCCATGGACCTTTATtagcttttaaaattattttgtataaatatctGCCGTCTATTTAACTGTATTTTGACTGAAATCTCATGACAGATAGCAAAAGCAATTATTACAATTAATGTATGTAGTGCTTATGAATCTTTAGTATTTATGTATCTTTAATAGCAGTAATTCAGTTGTTGTTGGTCCATCTGTGTGCATCTGTTTGTACTTTGTGAGATTGTGTTTTGCAAACTATGTCTTGACTCATGTGTTTATTGTGCAATATAAACACATTCATATGAGCCATTCTCTTATAGTGAAATCTCTCTTTTTCACCATTCCTCGCTTTCTCAGGCCCGTGTTTAACTGTGGAGGGGATCTGGTTGGAGACTCAGGCTTTGTGGGAAGTGAAGGATTCCCATCGTTTTACAAACCCAACAGCAAATGTACTTGGTACATCACGGTCCCAGAGGGCAATGTGGTGATGCTGTCCTTCAGGATTTTTGATCTGGAAGCTGATCCTCTCTGCCGCTATGACTATGTGGATGTTTATAACGGACACTCAAACATGGTGCAGAAGCTCGGTCGCTTCTGCGGGACATTCAGGCCTGGGGCTCTCATCTCCACGTCCAACACCATGATGGTCGAGATGGTTTCAGATTCAGGAACTGGAGGCAGAGGGTTCGTGGCCTACTTCAATGGTGGAAAACCACACGTGGATGagcaCCAGTTTTGTGGTGGGAAGCTCACAAAATCTCAGGGCACGATCAAAACTCCCAATTGGCCAGAGAAAAATTATCCACCGGGCATCAGCTGTTCTTGGCTTATAACAGTGGAACCAGAAATGgTGATTGAAGTGAAGTTTGATAAGTTTGATTTAGAATCTGACACTTACTGCCGCTTTGACTATGTGGCGTTCTTTAACGGAGGAGAGAAAGACGATTCGAGGCGCATCGGAAAGTACTGTGGATACACTGCACCTCAGAACATTGTTACGAATAGCAACGTGCTGTTAGTGCAGTTCGTATCTGACCTGAGCGTGACTTCGGACGGATTCATGGCGTCATACACCAGCATCCCGCGTGGTCTCCATTCTCCGTCTGCAGGTGGCGATGTTGTGTCAGGACCAAGAGTGTCTTCAACACCCACAAAACCTAAAATCATCCCAGCAAAACCTGTCGTAACAACAGAAGCGATAACTACAACTACAACCACTACTACAGAGGCACCGGAACAGCCAAAGCCCCGACCTAAACCAGTTAGACCCATTAAACCTGTGAAGCCTCCAGTCCGTAAACCAGAGCCTGAAAGACCCAGACCTGCCACCGAAACAAACCCACTGTGTGCAAAGGCATGTAAAAGAGATGGAACTATCAAGACAAGCTTCTGTGCAAGTGAATTTGTGATCACCGGTACACTGACAGCATTGACTGCTGGACCTAGAGGAAGTATGCAAGGCACCGTGTCCTTAATTAAAGCCTATAAGACTGGCAGACTCACAATCACCCAAGCTGGAGAAACCATGTCTGTCAAACTCATGATGCCCTGCAAGAAATGCCCATTGCTGCGCAGAGGTCAAAACTACATCCTGATGGGTGAGGTGGACGATGAAGGCCGTGGTGTTCTCAATCCTGGCACTTTCACAGCTCTTTACAAAGCCCCACATCACAAAATGCTGACCAACATCAACAACCAGCCATGCTGA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-370 Predicted to be located in extracellular region. Orthologous to human PCOLCE (procollagen C-endopeptidase enhancer).

Ensembl:

ensembl_id ENSDART00000183269

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006041 lncRNA downstream 182029 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00006040 lncRNA downstream 222536 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00006039 lncRNA downstream 254820 22530785 ~ 22534924 (-) True XLOC_002748
TCONS_00005093 lncRNA downstream 298286 22481158 ~ 22491458 (-) False XLOC_002745
TCONS_00006038 lncRNA downstream 882608 21895919 ~ 21907136 (-) True XLOC_002733
TCONS_00006042 lncRNA upstream 109438 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006043 lncRNA upstream 715163 23513122 ~ 23519215 (-) True XLOC_002761
TCONS_00006044 lncRNA upstream 720102 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00006045 lncRNA upstream 751017 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006046 lncRNA upstream 982583 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005096 mRNA downstream 283700 22501763 ~ 22506044 (-) True XLOC_002747
TCONS_00005095 mRNA downstream 291764 22494826 ~ 22497980 (-) True XLOC_002746
TCONS_00005094 mRNA downstream 298391 22484340 ~ 22491353 (-) True XLOC_002745
TCONS_00005091 mRNA downstream 540300 22161585 ~ 22249444 (-) True XLOC_002743
TCONS_00005090 mRNA downstream 639325 22144768 ~ 22150419 (-) True XLOC_002742
TCONS_00005101 mRNA upstream 11756 22809715 ~ 22831611 (-) False XLOC_002753
TCONS_00005102 mRNA upstream 14484 22812443 ~ 22828371 (-) False XLOC_002753
TCONS_00005103 mRNA upstream 14565 22812524 ~ 22828302 (-) False XLOC_002753
TCONS_00005105 mRNA upstream 40405 22838364 ~ 22845485 (-) True XLOC_002754
TCONS_00005106 mRNA upstream 50597 22848556 ~ 22854758 (-) True XLOC_002755
TCONS_00005097 other downstream 37396 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 517841 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 882639 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 1216338 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005070 other downstream 1245227 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005104 other upstream 30407 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005129 other upstream 1579458 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 1585307 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 1657657 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 2696214 25494173 ~ 25499474 (-) True XLOC_002790

Expression Profile

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