RNA id: TCONS_00005103


Basic Information

Item Value
RNA id TCONS_00005103
length 3690
RNA type mRNA
GC content 0.50
exon number 18
gene id XLOC_002753
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22809715 ~ 22831611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACCGACAATCAATCTCTATGTCCTGGGCTGAACATCACGAATGAATCTCAGCAAACACATTCAGGTGACACCGATGCCCAGTCCAGCGGGATCGACTCAACGGAGAGGGAGAACGATGGACGTTTGGGACATGGAACCTCAACCTGTAGCTCACTGCACGGAAAAGGCTCAGCCACAGAGACGACGGAAAGCAAGAGCTCAAATGGAAACAGTCCGTCTCCCCCGAGCAGCTCAGTGTCATTCAGTCTTTTGAGCGGAAGTTCAGAGCAGGATCATTCGACATCCCAAGCATCCAACAGTGACCAACCAGCCCGACTTCAGACCCAGAGAGAGCTGCTAAAAGTCCTGCGTGAGCTGAAGATCCACATGCCAGCAGAACGGCGCAGGAAAGGCCGATCTAGCACACTAGCATCTCTACAGTACGCACTTAGCTGTGTCAAACAAGTCAGAGCTAATCAAGAGTACTACCATCAGTGGAGTGTGGAAGAAAGCCATGGGTGTTGTTTGgacctgtcatcatttactattgAAGAGCTAGACAACGTTACGTCAGAGTACACCCTTCAAAACACGGACACGTTCTCGGTGGCGGTGTCATTTCTGTCTGGTAAAGTGGTGTACATCTCATCCCAGGCGGCCTCTCTGTTGCGCTGTAAAGCTGAGAGGCTGCAGGGGGCGCTGTTTTCAGAGCTGCTCGCGCCTCAGGACGTCAGCACCTTTTACAGCAGCACTGCTCCCAGCCGTCTACCGCCGTGGTCCTCCTGTGCTGGAACTAGCTCACAGGTGGACTGTGCTGAGGAAAAGTCAATGTTTTGCCggatcagcagaggcagagacaGCAATGGAGAGGTGAAGTATCACCCCTTCCGTCTCACACCATATCAGCTCACTCTGAGAGACTCCGACACGTCCCAGCCTGAGCCCTGCTGCCTGCTCATCGCAGAGAGAGTTCATTCTGGATACGAAGCGCCTCGTATCCCAGCAGACAAGAGAATATTTACCACCAGTCACACCCCGAACTGTCTCTTCCAGGAGATTGATGAAAGGGCTGTGCCATTATTAGGTTATCTGCCTCAAGACTTGGTTGGGAAACCGGTGCTTGTTTACCTGCATCCAGAAGACAGACTGCTCATGGTGGCCATTCATAAGAAAATTCTTCAGTTTGCCGGACAACCTTTTGATCACTCGCCCCTGCGTATGCGTGCAAGAAGTGGTGAATATCTGACCATTGATACCAGCTGGTCTTCCTTTATCAACCCATGGAGCAGGAAGGTGGCTTTCATAGTGGGACGCCACAAAGTTCGAACGAGTCCGCTAAATGAGGACGTGTTCACTGCTCCTGAGGGTGAAGAGATGAAAACCATGTCTCCAGATGTACCGCAGCTGAATGAACTGATCCACAGGTTCCTGGTTCAGCCCGTTTACGGTGGCAGCTCACAGGGGTACGGCAGCCTGGGCAGTAGTGGCTCACATGAGCACCAGCAAGGTGCAACTTCCTCCTCTGAGAGTAATGGACATACATCTGAGGACCAGATCAAGCCCAGGAAACCAATGACATTTGAGCAGATTTGTCAAGACATGCACATGGTAAAGACCAGCGGACAGCAAGTTTTCATTGAATCACGAAACCGACCACCAGCTCTTAAACAGGGCAGCTTAGAAGCACTGGCAAAGGCAGCAGATACAGCAGAGGCCTCTGCTAGAGATGGTCTGGCAAGTTTAGCACTGTCCAGTCCACCCAGGAAGGAGCTGCCTATGATCTACTCATACCAGCAGATCAACTGCCTGGACAGCATCGTACGATATCTGGAGAGCTTTAATGTCCCTGGCACTGTGAAGAGGAAGTGTGGCTCTTCCTCTTGTACAACCTCTTCTACCTCTGATGATGATAAACAAAGGGAAGGAGCTGGAGCAACCCAAGCAGAGACTCTTGTGGTGACCGAGGGGTCAAAGGTCGTTCCTGCAGCACCGGCACACCCTCTAACCCCTCTTGCTCTACACTGTAAGGCCGAAAGCGTTGTCTCagccacttcgcagtgcagtttCAGCAGTACTATTGTTCACGTTGGTGACAAGAAGCCGCCTGAATCAGCTGTGCATGAGAAAGAAAAGGAGAAAGAGAGGAGAAGTGGAGGAAGCGCAGGGAAGGGTCTCACGAAAGCCGTGTTATCCGCACATACTCAACAAGAAGAGCAAGCCTTCCTCAACCGCTTCAGAGACCTCAGCCAGCTGCGGATGGTCCAACCTAGTGGGCTGCCACCACCACGCAGATGCACATCTATACCTGGAACAAAAGgaGTGAACAGCTCCCAGAACTATCCTTCTGTAGGCAACACCAGCAGTCGTCGGCATGGCAGGGGTGGGAAAAGACAGAAACATCAAGTAGATGGCAACATTCCAAACAATACCCCAATTTCTGCATCTGGCCCCTATAGAGGACCTAATCCTGCTCAGATAAGACCCAACTTCCCCTCTGTCCAGCAATCTTCCAACTCTTGGGCTCCATCTGCTGCATCCCAAACCAACGGTGCTCCAGTGGGTACATCTTTTCCTCCAAGCTACATGACCATGTTTCCAACTTCCTCACCATTCTCAGTAACCCAGATGGGAACTGATCCTTCCCTGCAAACAGGAGTCCCTAGATTTCCAGCGCAAGGCTTTCCTTCAGTGATGCCACCAGTCATGACATTCATGATGCCCAACTACATGTTTCCACAACTCTCTAATCCAGGATCACAGTTGAACCCAGCCAACTCCCAGCTCAACGCCCAAATGAACTCCTTTGGGCAGTTCCCTCCCCCTGTTGTTCAAATGAGTGTACCAATGTTCAATCCTGCAATGGGGCAATTTTATCCTTTGGGCTCCCAAATGAACCCTGCTATGCCTGCAATGATTCCCCAGCAGTTCTACAACCCAAATTATCAGTTAAATTTTTCCAACTCTCCATCAATGCCTGCTGCAAATGTCAGCACTACACCACATGGACAGTCTCGCTCCAGCACACCCCAGTCCACTGGGCCACAGGCTGGTGAGAGGGATGGGGCTGGATCTCCTTTGTTTCAGTCTCGATGCTCTTCCCCACTTAATCTTCTACAACTTGAGGAATTGCCAAGCAACAGAACGGATGCTACACAACAGACTCCACCTCCAGGGGGGAGCAGTAATACTAGCAAGTACTTTGGAAGCATAGACTCCTCAGAGAATGACCAGAATCACAAACCAGCATCTGGAGACCTGGGAGGGGAACAGTTTATCAAATTTGTCCTGCAGGACCCAATATGGCTCCTCATGGCCAACACAGATGACAAGATCATGATGACATACCAGATTCCTATCAAAGACAAAGATTCAGTACTGAAAGAAGACAGAGATGCCCTGAAAGCTGCTCAGAAGCATCAGCCTCACTTTACAGAAGAGCAGAAGAAAGAATTAACTCAGGTTCACCCGTGGATTCAAACTGGCTGCCTACCAAAAGCCATTAACGTTACATCTTGTACAGGATGTGAATCTCCCCCAGATTCCTCCACTCTTCCTCCATTTGATTTGGAATTCCATGAAATGGATCTCAATGTAGTTTTGAGGGAAGAGGCCAAACAAGAAGATAAACTTGCAGAAACAGCCTTTCCCTTGAGCCCCCCGTCATCTGATAATGAACAAAGAGACAACCAGGCCAACCTGAGCACATAG

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009648 photoperiodism biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009416 response to light stimulus biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0001222 transcription corepressor binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011220-1 Predicted to enable transcription cis-regulatory region binding activity and transcription corepressor binding activity. Acts upstream of or within photoperiodism and response to hydrogen peroxide. Predicted to be active in cytoplasm and nucleus. Is expressed in brain. Orthologous to human PER1 (period circadian regulator 1).

Ensembl:

ensembl_id ENSDART00000079459

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006041 lncRNA downstream 204809 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00006040 lncRNA downstream 245316 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00006039 lncRNA downstream 277600 22530785 ~ 22534924 (-) True XLOC_002748
TCONS_00005093 lncRNA downstream 321066 22481158 ~ 22491458 (-) False XLOC_002745
TCONS_00006038 lncRNA downstream 905388 21895919 ~ 21907136 (-) True XLOC_002733
TCONS_00006042 lncRNA upstream 79095 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006043 lncRNA upstream 684820 23513122 ~ 23519215 (-) True XLOC_002761
TCONS_00006044 lncRNA upstream 689759 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00006045 lncRNA upstream 720674 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006046 lncRNA upstream 952240 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005098 mRNA downstream 8670 22789319 ~ 22803854 (-) False XLOC_002752
TCONS_00005099 mRNA downstream 8784 22789333 ~ 22803740 (-) False XLOC_002752
TCONS_00005100 mRNA downstream 14565 22789744 ~ 22797959 (-) True XLOC_002752
TCONS_00005096 mRNA downstream 306480 22501763 ~ 22506044 (-) True XLOC_002747
TCONS_00005095 mRNA downstream 314544 22494826 ~ 22497980 (-) True XLOC_002746
TCONS_00005105 mRNA upstream 10062 22838364 ~ 22845485 (-) True XLOC_002754
TCONS_00005106 mRNA upstream 20254 22848556 ~ 22854758 (-) True XLOC_002755
TCONS_00005107 mRNA upstream 79049 22907351 ~ 22912255 (-) False XLOC_002756
TCONS_00005108 mRNA upstream 87811 22916113 ~ 22918214 (-) True XLOC_002757
TCONS_00005110 mRNA upstream 132078 22960380 ~ 22970723 (-) False XLOC_002758
TCONS_00005097 other downstream 60176 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 540621 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 905419 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 1239118 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005070 other downstream 1268007 21543901 ~ 21544517 (-) True XLOC_002729
TCONS_00005104 other upstream 64 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005129 other upstream 1549115 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 1554964 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 1627314 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 2665871 25494173 ~ 25499474 (-) True XLOC_002790

Expression Profile

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