RNA id: XM_036963274.1


Basic Information

Item Value
RNA id XM_036963274.1
length 5481
RNA type mRNA
GC content 0.56
exon number 27
gene id LOC118944401
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 2958963 ~ 3117243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGTTTACGTTTTCCGCCGAACTAGCAGTTTGAATCGTCTCAGTTTAACTGCTGTGCCAGCTGTAGCTCTGTCTATTTCCATCTCATGAGTCACTCATTCTCAACTTCCAGCAGCAGTTCCAACCCCTCACACTCCGCTTCCTGATACCTGACGTCACACGGTCACCGCAAGGGGTTGTCCGCTGGTGTGTTCTGTACAGCAACAGTTTCCCTTTTAACACGGAGAGAAAGAGCGTCAAGCGGGGAAGAACAAGTCGCCGCGTTTTTTTCCTTCTTTATTTTAAAATGGAAGTTTAGGACAAGGGGAATATATCCGCAGGGCCACAGCTCTACACCGCGACTGACAGCAGAGAAACGTTATCCCCAGCCGGCTGAGGAAAAGCCATGGCCATTATAACCTGCCGAGTGCAGTATTTGGAGGACTCGGACCCTTTCGTCTGTACCAACTTCCCGGAGCCACGGAGACCGCCGCCCTATGATCTGGACGAAAACATCGCCTTGATTGAGCAGATAGCCGGGGTTCACAAACTCCTGGAGGCACCGCTGAAGTTGGAGGAGTGTGCTCTGCAGATGGCCCCCAATGGGAACTACCTGGACCTTGACCTGTCTCTGGGGGAACAGAAAGATGATGTGGAACAGCTCTATGACGACGTGGGtagaGGGAAGAAGCCCATCCTGATCCTGAGAACTCAGCTATCTGTCAGAGTCCACTCCATTCTAGAGAAGCTGTACAACTCTCATGGACCTGAGCTCCGGAGGTCCCTGTTCTCCCTCAAGCAGCTCTTCGAGgaCGATAAAGACCTGGTGCCAGAGTTTGTGAATTCAGAAGGCTTGACGTGTTTCATCAAGGTTGGAGCGGAGGCCGACCACAACTATCAGAACTACATTCTCCGAGCCCTCAGTCAGATCATGCTGTTTGTAGATGGGATGAACGGTGTGATCGACCACAATGACACTGTTCAGTGGCTCTACACTCTCAGTGGCAGTCTGtCTCGTCTGGTGGTGAAGACCGCTCTGAAGCTCCTGATAGTGTTTGTAGAGTACACAGAGTTGAACAGTCCTCTACTTATCCAGGCTGTCAACACTGTGGATGGCaagagagGTGTGAAGCCGTGGTCATACCTGACAGAGATCCTGGAGGAGAAGAACGGATCAGACACCGAGCTGTTCATCTTAaccatgaacctcatcaacaagACCCTTGCAGCCCTCCCGGACCAGGACTCGTTCTACGACGTGACCGATTGTCTGGAACAGCAGGGGATGGAACACATTATGCACAAACACATGAGTAGCAAGGTCACTGAGCCAGACCTGAAACAGCAGTTCACCATATACgagAGGGCTCTGAGGCACGAGGACGGAGAGATGGATGCTGCTCCTCACgttaggaaggagaggaggaaggtgacAGCCAACGAACAGGAGGGCAGGAGGATCAGGAGATCCTCAGCTCAGAACCTCCCCgacatcctctcctcctcacctaccACATCCAacactatctctccctcctccactctctccccttccaccccctctcctttctctccctcctcctccactctctccccttccacctcctcccctttctctccctcctcctcctctccctctaacaGTCCTACAGCCGGGCTGAGTAggacctcctcccctctcccctcctcctctcgtaGCGCCTCACCCCTCACCCCAACCTCCAGCCCATCAGACTCTGGTTCTCAGAGGTCCTCTCCTCTACCGCCCCCCGAGGTGACCAACGGTACTGCAGCCTCCCTGTCTCCCACCGAACAGGAGCCCAAGACAACGTCTAATCTGGGGCGATCATTCCTCAGTCACCACATGTCTGCCTTGGGGATCAGTAGGAGGTCACGGCACTTTAACAAGGCTGGTTCCATCTCTGAAGAACCTGCTCCTTCTGCTTCTCGAGCCGCAAGCAGCCCGTCTCCTACTGACTTGGCTGGCCCTGAGAAGCAACAGCAGCCCCAGACGGTCCCGGTGCAACACGGGAACAAGACAGAGAGGAACACCTTCAGCTCTGAGCAGGCCAGCCACAGTGCCGTTTGCCCAGAGGACTGTAACGTTAATATGGACAAGCCCGTCCTTAGGAAGTTTCAAGGCACCTTCCTCCGCAACCTGGTCGCCACCCAGTGGGAGAAGACGAGTAGGAGCCAACACGAGAAGGTCCAGGATGACCCCATAGTCACGTCCcccagggaagaggaggagacctcACCTGCAGACAGCAGCCCCAGTACACCCACCGAAGcCCCGTTCCAGGCCAGCGGTGCAGAAACGGGGCCCCAGCCAGAGCTCCATACAGGGGGGCAGGTCTCAGGAGAGACTGGCCCCATCCAGAGAACCATGGAGCAGCCTGACCCAGCAGACACCCAGGCGACCCATAATGATCCAGGTGTCAGTGTCCAACAGAAAAACCTCTCCAACGAGAAGAAGTTCGTGCTGAACATGCTCTACGCCAATAACTCCTCGGGGTCTTCAGGGGAGCGGCCGTCAGGCaccaaccctgaccccaacctcAACCCCGAGGAGAGCCTCTCCGGAGAGCCAGAGGACCACAGAGGGCTGGGCAGGGCTGGTAGCAGTGTGAAGGAACGTCTATCTAGCCTCAAGGCCCAGCAGGCCCAGCCTCTACCCAGCGAGGACAGCAGTTCCAGGAGGGCAGAGCTGCAGGGTCTGGGTGGCAGTGCCCAGGCGGCGCGGGCCAGGCTGGCAGAGGAGCAGCAGCACAGGCGTGTCCGGCCGCAGTACAGCATCGACGCAGAGACCCACTCCCGAAACCTGGAGAAAACCCAGATGACCCCACTGGccagggacagacagacggacgccTGGGACCAGCTCCAACCCAGCTCCAAAGCCCTGAAGATTAAAGACCTGGACTTCTCCGACctcatggaggaggaggacataGATGTCCTGGACGTGGACGTCTTTGACGTGGGTGTTGGTCGGCCCGGTGGCGGTGGTGGCggcatcccacctcctcctccacctattCCTGGACTAGCgtccgctcctcctcctcctcctcctcctcctcctccccccgggGCTCCGTTTATGagtatccctcctccacctcctcccccaccGGGTGGAGgtctctgctcccctcctccaccacctcctcctggagctcccccttcctcctcctcctcctcttcccagaCTCCAGACCCGGCCTTTGCCAAGAAGAGGAAGACGGTCAAGTTGTTTTGGAAGGAACTCAAACAGTCAGACAGTCCCAGGAAGTGTAAATTCGGACGCGGGACGGTGTGGGCGTCCCTGGATAAGGTCACCGTGGATACGGCCAAGCTGGAACACCTGTTTGAGTCCAAGGCCAAGGAGCTACCCGTGGCTCTAAAGAAAGGATCAGAAGTGAAGAAAGCAGAGATTCTGGTGTTGGACTCTAAGAGGAGTAACAGCATCAACATCGGCATGACCGTACTACCAGCTGTCCACGTCATCAAGACCGCCATCCTCAACTTTGACGAGTTTGCCATCAACAAGGAGGGCATCGAGAAAATCCTGACGATGACTCCTtcggaggaggagaaacagaagatCCAGGAGGCTCAGCTGGCCAACCCGGACGTCCCCCTGGGCTCAGCAGAACAGTTCCTCCTCACCCTGTCCTCCATCAGCGGCCTCAGCGCTCGGCTACAGCTCTGGGCCTTCAAACTCAACTATGAAACCCTGGAGAAGGAGATAGCGGAGCCTCTCTTCGACCTGAAACTAGGCATGGAGCAGCTCGCCAAAAACAAAACCTTTAAGCGTATCCTAGCAACGCTTTTGGCCATTGGAAACTTCCTCAACAGTACCAGTgcTAAAGGTTTTGAGCTGAACTACTTGGAGAAGGTAACTGAGGTGAAGGATACGGTCCACAGACAGTCTCTGCTCCATCACACCTGCAACTTCCTGGTGGACAACTACACCGACACCTCAGACGTGTACTCCGAGATCCCCTCCATCACACGCTCTGCTAGAGTGGAGTTTGAGCAGCTGTCAGATAGCCTGGTTCAGCTGGAGAGGAAGTGTAAGACATCGTGGGACAATCTAAAGGTGATGTCTAAACACGAGACCAAGGCCCTCCTGAAGAACAGGTTGACAGAGTTCCTTAAAGACTGTACAGAGAGGATCATTATCCTGAAGGTGGTTCACAGACGCATCATCAAcaggTTCCATTCCTTCCTGCTGTACCTAGGTCAGCCATCCTACTCTGTCCGGGACACTAAGGTGACCCACTTCTGTAAGATTATCAGTGAGTTTTCTCTGGAGTACCGGACCACCAGGGAGAGGGTCCTGACCCAGAAACACAAGCGGGCTACCCACAGAGAACGCACCAAGACCAGGGGAAAGATGATCACTGAGACAGAGAAGTTCTCAGGGGTGGTGTCTCCCCAGTCCCAGGACAGCCCCTCCCTTGGCTCCAGGCCTACAGAGCCAGATCCAGATCCAGCCCAGGAGGAGCATGACAACATGAAGAACGTGCTCAACACCTCCAGCGGTACCGAACACCAGGGGAACCTGCGCCGCAACCGGGGCTACCGCAGTCTAGGCCCAGTTAGTCCATCCCAGATGTCTGTAGCCAAAGAGGACAGTGCTAGCTCCCAGGATGATGCTACGGATGAGATCATGGATCGGCTAGTCAAGTCTGTTACCAGGAGCCCCTCAGAGAGGCCGTCCAGCCCCAAGACACGCAAACGCTCCCGCCTCAACAGGAAGTCGTTGAGGAGGACTCTGAAGAGCGGACTAAGTGTTGACGTGGTTCAGGCTCTGGGACTCGACAACAAGACTGGAGACCAGCTCTgaacacacacagtactaacacacacacagtactaccagacacacacacacacacacagtactaccaGACACACCAGCCATGAAGAGGAAGGATGAAGCTTgtaccacacacagagacacagcactaccagacacacacacacacacagcactaccagacacacacacacacacacacacacagcactaccagacacacacacacacagcactaccAGACACACCAGCCATGAAGAGGAAGGATGAAGCTCGTACCACACACAGCACTACCAGACACACCAGCCATGAAGAGGAAGGATGAAGCTCGTACCGAGGGCCTGGATCTTAGAAAGTCCTGAtgtgacagagagaagagacagtacATGTAGGAAGGACATACTGGTGCTCACTACAGTAGCCCCGCCCCCGCCCACAATGCTTTGGGCTTGTTCCTGTCTCACTACAGTagcccccccccgcccctcccaCAATGCTTTGGGCTTGTTCCTGTCTCACTACAGTAGCCCCCCCCGCCCCTCCCACAATGCTTTGGCCTTGTTCCTGTCTCACTACAGTAGCCCGCCCCTCCCACAATGCTTTGGCCTTGTTCCTGTCTCACTACAGTAGCCCGCCCCTCCCACAATGCTTTGGCCTTGTTCCTGTCTCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2276710 lncRNA downstream 2444 2955410 ~ 2956519 (-) False G1990296
TU2276711 lncRNA downstream 2444 2955410 ~ 2956519 (-) True G1990296
TU2276720 lncRNA downstream 54629 2903484 ~ 2904334 (-) True G1990301
TU2276755 lncRNA downstream 99104 2859383 ~ 2859859 (-) True G1990326
TU2276713 lncRNA downstream 105933 2851656 ~ 2853030 (-) True G1990297
TU2276870 lncRNA upstream 2132 3119375 ~ 3119592 (-) True G1990400
TU2276960 lncRNA upstream 6934 3124177 ~ 3129186 (-) True G1990443
TU2276978 lncRNA upstream 66697 3183940 ~ 3185658 (-) False LOC118944414
TU2276982 lncRNA upstream 66697 3183940 ~ 3186858 (-) False LOC118944414
TU2276981 lncRNA upstream 67182 3184425 ~ 3186358 (-) False LOC118944414
XM_036964029.1 mRNA downstream 53280 2856093 ~ 2905683 (-) True LOC118944482
XR_005039821.1 mRNA downstream 85123 2871334 ~ 2873840 (-) True LOC118944483
XR_005039822.1 mRNA downstream 86871 2871334 ~ 2872092 (-) False LOC118944483
XM_036964548.1 mRNA downstream 172481 2589463 ~ 2786482 (-) False LOC110519438
XR_005039860.1 mRNA downstream 474571 2483877 ~ 2484392 (-) False LOC118944516
XR_005039677.1 mRNA upstream 67696 3184939 ~ 3185792 (-) False LOC118944414
XM_036964368.1 mRNA upstream 359915 3477158 ~ 3492750 (-) False LOC110506223
XM_036963774.1 mRNA upstream 956802 4074045 ~ 4158044 (-) False LOC110516700
XM_036963773.1 mRNA upstream 956809 4074052 ~ 4158044 (-) False LOC110516700
XM_036964019.1 mRNA upstream 1253139 4370382 ~ 4390965 (-) False LOC110498670
TU2276708 other downstream 2444 2955410 ~ 2956519 (-) False G1990296
TU2276709 other downstream 2444 2955410 ~ 2956519 (-) False G1990296
TU2276687 other downstream 172477 2748481 ~ 2786486 (-) True LOC110519438
TU2276273 other downstream 472369 2478242 ~ 2486594 (-) False LOC118944543
TU2276234 other downstream 559229 2398273 ~ 2399734 (-) True G1989939
TU2277022 other upstream 169924 3287167 ~ 3288498 (-) True G1990495
TU2277351 other upstream 364219 3481462 ~ 3482641 (-) True LOC110506223
TU2277346 other upstream 385708 3502951 ~ 3515660 (-) False G1990760
TU2277348 other upstream 385708 3502951 ~ 3505940 (-) True G1990760
TU2277524 other upstream 692962 3810205 ~ 3810560 (-) True G1990907

Expression Profile