Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005107 |
| length | 1342 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 6 |
| gene id | XLOC_002756 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 22907351 ~ 22912255 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000045 | autophagosome assembly | biological_process |
| GO:0039689 | negative stranded viral RNA replication | biological_process |
| GO:0000421 | autophagosome membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-030131-863 | Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. |
| ensembl_id | ENSDART00000131992 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006041 | lncRNA | downstream | 299636 | 22604273 ~ 22607715 (-) | True | XLOC_002750 |
| TCONS_00006040 | lncRNA | downstream | 340143 | 22554349 ~ 22567208 (-) | True | XLOC_002749 |
| TCONS_00006039 | lncRNA | downstream | 372427 | 22530785 ~ 22534924 (-) | True | XLOC_002748 |
| TCONS_00005093 | lncRNA | downstream | 415893 | 22481158 ~ 22491458 (-) | False | XLOC_002745 |
| TCONS_00006038 | lncRNA | downstream | 1000215 | 21895919 ~ 21907136 (-) | True | XLOC_002733 |
| TCONS_00006043 | lncRNA | upstream | 600867 | 23513122 ~ 23519215 (-) | True | XLOC_002761 |
| TCONS_00006044 | lncRNA | upstream | 605806 | 23518061 ~ 23520243 (-) | True | XLOC_002762 |
| TCONS_00006045 | lncRNA | upstream | 636721 | 23548976 ~ 23549882 (-) | True | XLOC_002763 |
| TCONS_00006046 | lncRNA | upstream | 868287 | 23780542 ~ 24049205 (-) | False | XLOC_002764 |
| TCONS_00005116 | lncRNA | upstream | 1021523 | 23933778 ~ 24049123 (-) | False | XLOC_002764 |
| TCONS_00005106 | mRNA | downstream | 52593 | 22848556 ~ 22854758 (-) | True | XLOC_002755 |
| TCONS_00005105 | mRNA | downstream | 61866 | 22838364 ~ 22845485 (-) | True | XLOC_002754 |
| TCONS_00005101 | mRNA | downstream | 75740 | 22809715 ~ 22831611 (-) | False | XLOC_002753 |
| TCONS_00005102 | mRNA | downstream | 78980 | 22812443 ~ 22828371 (-) | False | XLOC_002753 |
| TCONS_00005103 | mRNA | downstream | 79049 | 22812524 ~ 22828302 (-) | False | XLOC_002753 |
| TCONS_00005108 | mRNA | upstream | 3858 | 22916113 ~ 22918214 (-) | True | XLOC_002757 |
| TCONS_00005110 | mRNA | upstream | 48125 | 22960380 ~ 22970723 (-) | False | XLOC_002758 |
| TCONS_00005109 | mRNA | upstream | 48125 | 22960380 ~ 22970723 (-) | True | XLOC_002758 |
| TCONS_00005111 | mRNA | upstream | 158486 | 23070741 ~ 23099809 (-) | False | XLOC_002759 |
| TCONS_00005112 | mRNA | upstream | 158497 | 23070752 ~ 23099869 (-) | False | XLOC_002759 |
| TCONS_00005104 | other | downstream | 75922 | 22828366 ~ 22831429 (-) | True | XLOC_002753 |
| TCONS_00005097 | other | downstream | 155003 | 22752232 ~ 22752348 (-) | True | XLOC_002751 |
| TCONS_00005092 | other | downstream | 635448 | 22271789 ~ 22271903 (-) | True | XLOC_002744 |
| TCONS_00005077 | other | downstream | 1000246 | 21863066 ~ 21907105 (-) | False | XLOC_002733 |
| TCONS_00005073 | other | downstream | 1333945 | 21570361 ~ 21573406 (-) | False | XLOC_002730 |
| TCONS_00005129 | other | upstream | 1465162 | 24377417 ~ 24379776 (-) | True | XLOC_002767 |
| TCONS_00005130 | other | upstream | 1471011 | 24383266 ~ 24383381 (-) | True | XLOC_002768 |
| TCONS_00005133 | other | upstream | 1543361 | 24455616 ~ 24455732 (-) | True | XLOC_002771 |
| TCONS_00005164 | other | upstream | 2581918 | 25494173 ~ 25499474 (-) | True | XLOC_002790 |
| TCONS_00005183 | other | upstream | 3220214 | 26132469 ~ 26141081 (-) | False | XLOC_002799 |
