RNA id: XM_036964092.1


Basic Information

Item Value
RNA id XM_036964092.1
length 2801
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC110527018
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7002295 ~ 7039738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATGTACTTGGCGGATTATGAACAAATGAATAGGAATGCTTTGAATTTAAAGCAGTTTAAACGTGTTCGTGAGAATGTGAGAGATTGTGTGAACACCTAACCTAATCCTCTTAAAAGACTGCAGGTATTATGCTGAGCCGTGGAGAGGAGGTGTGAGCTGTCATCCTGCGGTGCGCCCTTGTAGCCGCTCACCAAAAACTAGTGTCAGCATCTCTCAACCAATCCCTTTACCTTAGCGCACACAGCTGGAGAGAGACCTCGCGTCTAGAACACCTCTATCACAACAACTCAGCGATTAAAGTTTGGAGCTGGGACATCATGCCAGGACTATGACATTAAAACAGACTATGCTGAAGATGTGTGCTGACCGCTCACTGAACTGCATTATTTGGCTAACTAATGCTACTGGACCTGTTCCCATAAGCCTAACCATGCATCTGACACGGACCTAATAATCCGCTGTGGGAATCAAGACCACTCTGGCAGCGGTGAACAATGCATTTGCCACAAAGACGGAGACTCAATCGGAGTcgcatcctcttcttcctctctggtGTATTACTGTGCTGCGTCTACACCGTGACGTTCAAGGCCCGGCTGCAGGAGCCACGGGTGGCCCGCCAGGCCGCTGCAGAGGAGGACCCTGGGACAGCACTCCCGGTGGAAGGGGgcggtagtgatagtagtagtgttCTGGAGGTAGACACACGAGAGGTggtgacctctaacctctctagCCTAACAGAGAGCTATGATGATGACGTCATCACCAGGGCTCCTACTGTGCTGGAGGGGGATGACGTCATCGTGATAACTGTCAACAGGACTGACATTAAGCACTGTATCTACGTAGAGGACCCTGAACCTGAGCCTCCGACTGAAcctcctcccacctcccctcctcctaaCACCACCACCTCCCCGGGTATCCCTGGAGATGTCCCCCACAGGAAGGGAGAGTACCCAGAGGACCTGTTCACAGTGGACCAGAGGAGGCAGGGCTGGGTGACCCTCCACATCCTGGGCATGGTCTACATGTTCGTCTCCCTCGCCATCGTCTGTGACGAGTTCTTCGTCCCGGCGCTCGGCGTCATCACCGTGAAGCTCGACATCTCCGACGACGTCGCCGGGGCAACCTTCATGGCTGCAGGAGGCTCCGCCCCCGAACTGTTCACCTCTCTGATTGGCGTGTTCATCTCCCATAGCAACGTGGGCATCGGGACAATCGTGGGGTCAGCGGTGTTTAACATCCTGTTTGTCATCGGGATGTGTGCCATCTTCTCCAGGGAGATGCTCCACCTCACCTGGTGGCCCCTGTTCAGAGACGTCTCCTTCTACATCatagATCTGATCATGCTGATCGTGTTCTTCTTGGACAACACCATCATGTGGTGGGAGAGCGTAATGCTGGTGTCAGGTTACGTGGCCTACGTCTGCTTCATGAAGTTCAACGTGCAGATCGAACACTTCGTCAAGACGCAGATCAACAAACACAAGAGCATCGTCAAGATCATCatgccagaggaggaggaggagaaggaacccAAGAAGCAGAACAGTGGACATCCACCACCTGATCCACCTCAAAACAATGTTTCACCAGAACCCAAACCACTACCTCAAGACTCACcccagaagagagacagagaaaaactgAAGGTGAAGCCCACTCTCCAGAGAGGAGGCAGTAATGCGTCTCTCCACAACAGCACCAACAGAAACACCATCTTCCAGCTGATGATCCACACACTGGACCCACTGGGAGAAGAAACAACAACCTTTAATGGGGAGGTCAGGACAGAGGTGTCGGTGCAGAGGAAAGCTGGACCTGAGAAGACTGAGCAGGCTGAACCCTCGACCTCCCAGACCACACCTAAAGAAGAGGAGAAACAAGGCCtgtcagagactcagacggaccaggggccagcgggcgCAGGGGGGTCCGACGGCTCAGACAGCGGTGAGGAGGacgagagtgaagaagagagcgAGGATGAGGAAGACGAGGATGATGAAGACGAAGAGGACGATGAGGAAaataaagaggaggaagagggtgaaGAGAACGAGGAACCTCTGTCGTTAGAATGGCCAGACACCAGACGTAAACAGGCCACATATCTTTTTCTCCTACCGATAGTGTTCCCTCTGTGGCTCACTGTGCCCGACGTACGCAACCCGGCTTCCAGAAAATACTTTGCCATGACGTTTATTGGTTCCATCACGTGGATCGCTGTGTTCTCCTATCTAATGGTCTGGTGGGCACATCAGGTGGGTGAAACCATAGGCATCTCAGAGGAGATCATGGGCCTGACCATCCTGGCAGCGGGCACCTCCATCCCTGACCTCATCACTAGTGTCATCGTGGCCCGGAAAGGACTGGGAGACATGGCTGTGTCCAGCTCAGTGGGATCCAACATCTTCGATATCACTATGGGCCTGCCTGTCCCATGGTTGATCTTCTCGGCGATGCAAGGCGGCGTACCGGTGGCGGTGAACTCCAACGGTCTGTTCTGTGCCATCGTGCTCCTCTTCGTCATGCTCCTCTTCGTCATCGTCAGCATCGCGGCGTGTCGGTGGAAGATGAGCCGCGTTCTGGGCCTCACCATGTTCATGCTTTACTTCGTGTTTCTGGTGCTCAGCGTGATGCTGGAAGACCGTATTATTATCTGCCCCGTCTCCAtctgaggtcagaggtcagacacaCCCACTTGGAACCcagtccacccactggggagccaggcccacccacttggaacccagtccacccactggggagccaggcccacccacttgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2280731 lncRNA downstream 2747 6999320 ~ 6999548 (-) True G1993117
TU2280732 lncRNA downstream 4299 6997075 ~ 6997996 (-) True G1993118
TU2280716 lncRNA downstream 16249 6985212 ~ 6986046 (-) False G1993112
TU2280717 lncRNA downstream 16249 6985295 ~ 6986046 (-) True G1993112
TU2280711 lncRNA downstream 28978 6973014 ~ 6973317 (-) True G1993107
TU2280778 lncRNA upstream 941 7040673 ~ 7042700 (-) True G1993134
TU2280788 lncRNA upstream 26442 7066174 ~ 7068038 (-) False G1993140
TU2280790 lncRNA upstream 26442 7066174 ~ 7068038 (-) False G1993140
TU2280791 lncRNA upstream 26442 7066174 ~ 7068038 (-) True G1993140
TU2280797 lncRNA upstream 49571 7089303 ~ 7089516 (-) True G1993146
XM_036964502.1 mRNA downstream 171300 6824064 ~ 6830995 (-) True LOC110516490
XR_005039648.1 mRNA downstream 605275 6394083 ~ 6397020 (-) False LOC118944398
XR_005039647.1 mRNA downstream 605297 6394083 ~ 6396998 (-) False LOC118944398
XR_005039817.1 mRNA upstream 8028 7047760 ~ 7048469 (-) True LOC118944479
XM_036964021.1 mRNA upstream 9199 7048931 ~ 7061551 (-) True LOC110506999
XM_036963428.1 mRNA upstream 28880 7068612 ~ 7086951 (-) False LOC110507001
XM_036963429.1 mRNA upstream 28948 7068680 ~ 7086951 (-) True LOC110507001
XM_021608192.2 mRNA upstream 135350 7175082 ~ 7179679 (-) False LOC110527022
TU2280111 other downstream 558066 6431875 ~ 6444229 (-) False LOC118936596
TU2280107 other downstream 558066 6443346 ~ 6444229 (-) True LOC118936596
TU2280112 other downstream 572582 6425056 ~ 6429713 (-) False LOC118936596
TU2280099 other downstream 591305 6397044 ~ 6410990 (-) False LOC118936596
TU2282068 other upstream 349513 7389245 ~ 7389568 (-) True G1994075
TU2282226 other upstream 611654 7651386 ~ 7665132 (-) True LOC118936603
TU2282281 other upstream 709563 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other upstream 709815 7749547 ~ 7751377 (-) True LOC110526845
TU2282311 other upstream 764112 7803844 ~ 7805854 (-) True LOC118944558

Expression Profile