RNA id: XM_036963317.1


Basic Information

Item Value
RNA id XM_036963317.1
length 1428
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110526832
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7406157 ~ 7439603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTGACCAGATCAAATATCACTATAACACAAGGACTTATTTGATGAGAAGAGTTACAGCCAGTCTCCCCATCCGTCGCCAAGGAGTCTCACTTCTTTCAACTTTTCTGAGGTGTAAATCCACCGTCACCATGTCTGACACTGAGGAAGTTGATCAGATCGAGGAAGAGGTAGTAGAAGTAGAGGTAGCCCCCGAGGCAGCcccagaggaggaggtagaggaagaggaggtagaggaggaggcagaacccgagcctgagcctgagcccgAGGTTGTAGAGGAGGAAGTCGAGGAAGGAGAACAAGATGAGGAGAAGCCCAAGTTCAAAGTCCCTAAGGTCCCTGATGGCGAGAAGGTGGACTTTGACGACCTCCATAAGAAGCGTCAGAACAAAGACCTGATTGAGCTGCAGGGGCTGATCGACGTCCATTTTGAGAacaggaagaaggaggaggaggagcttaTCGCCCTCAAGTCCAGAATTGAGAAACGCAGGTCAGAGAGGGCTGAGATCCAGAGGGTACGCACTGAGAAGGACAAGGAACGCCAGGCCAGACGTGAGGAGGAGAGGCTGAAGAAGGAGGAGATGGATCAAAGGAGAAAGGCTGATGATGACGCCAAGAAGAAGTCAGCTCTGACCAACATGGGCTCCAGCTATAGCAGCTCACTGCAGAAGGCCGACACTAAGAGAGGAGGTAAGAagcagactgagagagagaagaagaagaagatcctGGCGGAGCGACGCAAACCGCTCAACATCGACCATCTGAACGAGGACAAGCTAAAGGACAAGGCCAAGGATCTATGGGAGTGGATGCACCAACTGGAGTCTGAGAAGTACGAACACATTGAGAAACTCAAGAGGCAGAAGTATGAGGTCATCTCTCTCAGAAATCGTATTGATGAGCTTCAGAAACACAGCAAGAAGGGAGCAGCAGCCCGCCGCAGAAAGTAAACTGCGCCGACCTCAAGAGGCCTCAGCACCGGCGTGCGTCCGCCATGCTGCCCACTTCTGTACCGGCAGGGACaactgcctctgcctctgcccgCAACAGCCATCCAGAGACCGGCTAGACTCACGTCATGGAACCGACAAGATGCACTGGATGTCCTACGGTCTGCTTTCGTGTTATGTGAATTATGTTGTCACATTCGCATTCTTCTCATGTCCTGTCCTCTCACAGCGGACTGTTGTTAGGTTCTCATGTCCTGTCCTCTCACAGCGGACTGTTAGGTTCTCATGTCCTGTCCTCTCACAGCGGACTGTTGTTAGGTTCTCATGTCCTGTCCTCTCACAGCGGACTGTTAGGTTCTCATGTCCTGTCCTCTCACAGCGGACTGTTAGGTTCTCATGTCCTGTCCTCTCACACCGGACTGTTAGGTTCTCAtcgtattttttttgtaaataaaaaaGAGTGACgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282079 lncRNA downstream 689 7405203 ~ 7405468 (-) True G1994084
TU2282075 lncRNA downstream 5437 7400236 ~ 7400720 (-) True G1994082
TU2282070 lncRNA downstream 15754 7390186 ~ 7390403 (-) True G1994077
TU2282058 lncRNA downstream 40319 7365620 ~ 7365838 (-) True G1994065
TU2282052 lncRNA downstream 51670 7353659 ~ 7354487 (-) True G1994059
TU2282122 lncRNA upstream 7199 7446801 ~ 7453901 (-) False G1994098
TU2282123 lncRNA upstream 11615 7451217 ~ 7453901 (-) True G1994098
TU2282158 lncRNA upstream 27463 7467065 ~ 7467771 (-) True G1994111
TU2282159 lncRNA upstream 35753 7475355 ~ 7476184 (-) False G1994112
TU2282161 lncRNA upstream 35753 7475355 ~ 7477201 (-) True G1994112
XM_021608192.2 mRNA downstream 226478 7175082 ~ 7179679 (-) False LOC110527022
XM_036963428.1 mRNA downstream 319206 7068612 ~ 7086951 (-) False LOC110507001
XM_036963429.1 mRNA downstream 319206 7068680 ~ 7086951 (-) True LOC110507001
XM_036964021.1 mRNA downstream 344606 7048931 ~ 7061551 (-) True LOC110506999
XR_005039817.1 mRNA downstream 357688 7047760 ~ 7048469 (-) True LOC118944479
XM_036964363.1 mRNA upstream 15619 7455221 ~ 7497908 (-) False LOC118944524
XM_036964359.1 mRNA upstream 15619 7455221 ~ 7528244 (-) False LOC118944524
XM_036964360.1 mRNA upstream 15619 7455221 ~ 7528244 (-) False LOC118944524
XM_036964361.1 mRNA upstream 15619 7455221 ~ 7528244 (-) False LOC118944524
XM_036964362.1 mRNA upstream 15619 7455221 ~ 7528244 (-) True LOC118944524
TU2282068 other downstream 16589 7389245 ~ 7389568 (-) True G1994075
TU2280111 other downstream 961928 6431875 ~ 6444229 (-) False LOC118936596
TU2280107 other downstream 961928 6443346 ~ 6444229 (-) True LOC118936596
TU2280112 other downstream 976444 6425056 ~ 6429713 (-) False LOC118936596
TU2280100 other downstream 1003262 6397044 ~ 6402895 (-) False LOC118936596
TU2282226 other upstream 211784 7651386 ~ 7665132 (-) True LOC118936603
TU2282281 other upstream 309693 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other upstream 309945 7749547 ~ 7751377 (-) True LOC110526845
TU2282311 other upstream 364242 7803844 ~ 7805854 (-) True LOC118944558
TU2282298 other upstream 431580 7871182 ~ 7873016 (-) True LOC110515105

Expression Profile