RNA id: XM_036964363.1


Basic Information

Item Value
RNA id XM_036964363.1
length 1985
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC118944524
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7455221 ~ 7528244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTTAACCAAGCCTTTTAAGAGTGAGCTACTATCGGGTGTTgagacacagctagagacacagatagagatgGCTGAGACACAGATAGTCATGGATGAGACACAGATAGTCTTGGATGAGACACAGGAAGACATGGCTGAGACACAGATAGTCATGACTGAGACACAGATAGTCATGACTGAGACACAGATAGTCTTGGATGAGACACAGGAAGACATGGCTgagacacagctagagacacagatagagatgGCTGAGACACAGATAGTCATGACTGAGACACAGGTAGTCATGgaggagacacagaaagagatgGATGACACCCCGAAAGACATGGTTGAGACACAGATAGTCTTGGACGAGACAACAAAAGACATGGATGAGACACAGAAAGAGATGGATGACACCCCGAAAGACATGGTTGAGACACAGATAGTCTTGGACGAGACACCAAAAGACATGGATGAGACACAGAAAGAGCTAGATGAGACACCGAAAGAGATGGATGAGACACCGAAAGAGATGGATGAGACACGTACTTCTTCCTTGTTTGTCACTGAAGGAGACAGtcgtAGTGGCAGCTTGGGAGGGCAGAGACAggaggaggtggatggagaggtTCCCGGGGGGCAGCTGGAGACAGAGAAGACACCAGGCCAGGGACAGGGCACCCTGGAACagctgagacagagacagcaggaggaccaggaggagatggaggagttgaaccgcaggagagaggagaaacgcagagccagggaggaggaggagcaccagagagagaaagaggagcagCACAGACAGGAGCAGGAGGAGgaggagaggaagagggtgaaAGACGGGATAGAGAGTAGGAGGATGGCGGCTTCAGAGAGAAGGATGAAGAACCTCAGTATTTCCAGCATTGAGGGAGACGAGTCCTTCAGCCCCTTCAGTCCCATGAGCCCCACCTTCAAGAATGACACCGAGGAGAGGATGACGTCTGAGAATACCTGCACGATCAACGAGAGGACTGAGTCTCTGAACCGCTCTCTGCAGAAAAGTAACAGCATCAAGAAGACCCAGCCTCCCATCCCCATCTCCAAGATCGACAACAGGCTGGAACAGTACACTCATGCCATAGAGACGTCCTCTATGGAAGCCAAGGCAGCCAGGCAGCAGGCTCTGACGGACCTGCCCAGCCCCACTGAGCCTGTGGCCTCCAAGAAGAATTTGTTTGAGGCCGGGGAAGCTTGGAGCCAGCCGCCCAGGGAAACACCTTCCAAGGATACAGAGGGTCTGAATGTAGGCGTGGCCGACCTCATCCACCAATGGGTGAAAGGGAACCCAGACGGAAGCTGCAAAAGCCTCTCCAAGCCAGCAtTTTCAACTGTCTTCCTACATCTCCGGTACATTCTAATCTGTCCCTTCTTCAAGGAGGTGAAGGCCGGTGATGTTCTGAGCAAGAAGAACCTCTGGGAGAATCTGGGAGACTCTTCCCCGTCTGGGAGAGCTGGGAAGGGAGCTTCCTCTGGTAAAAAGTACAAATTTGTGATGATGGCTCACGGCAAGTATGAGAAGGTTGTCGTCGGTGATGATGATTACAATGAGCACACAAACGGGAAATCAACTGGACAATGCCTTGAGGAACTGTGAAGAACAGACGTTGGACTGTGATTATTTCGACGATCACTTCACATCATATTTATCATTCATTTCATTTAGCTGACATATTCCTCTCAAAAACTATGTTTAGATCAACGTGTCTGAAGCATATGCAGTATGTTATGTGTACCAGTTGATTTTCTCTATAGCAACACACTGCCAACCTGGTATAAAATTATTCACAAACGGTCAAAAATATACAATTATTCAAAAATATTCATGTTTGTACTCGTTTATTTTGGACAATCTTATCCATGATGTATTTTAGTGAATAATGTGTTTTCATTTACTATTTGTTTTaactttaatttaaaaaaaaaataataaagtaaATGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282122 lncRNA downstream 1320 7446801 ~ 7453901 (-) False G1994098
TU2282123 lncRNA downstream 1320 7451217 ~ 7453901 (-) True G1994098
TU2282079 lncRNA downstream 49753 7405203 ~ 7405468 (-) True G1994084
TU2282075 lncRNA downstream 54501 7400236 ~ 7400720 (-) True G1994082
TU2282070 lncRNA downstream 64818 7390186 ~ 7390403 (-) True G1994077
TU2282169 lncRNA upstream 4013 7501921 ~ 7502416 (-) True G1994119
TU2282157 lncRNA upstream 54743 7552651 ~ 7553010 (-) True G1994110
TU2282131 lncRNA upstream 55172 7553080 ~ 7646023 (-) False G1994101
TU2282135 lncRNA upstream 144265 7642173 ~ 7644222 (-) False G1994101
TU2282134 lncRNA upstream 145146 7643054 ~ 7644222 (-) True G1994101
XM_036963311.1 mRNA downstream 15618 7406157 ~ 7439603 (-) False LOC110526832
XM_036963313.1 mRNA downstream 15618 7406157 ~ 7439603 (-) True LOC110526832
XM_036963310.1 mRNA downstream 15619 7406157 ~ 7439602 (-) False LOC110526832
XM_036963312.1 mRNA downstream 15619 7406157 ~ 7439602 (-) False LOC110526832
XM_036963314.1 mRNA downstream 15619 7406157 ~ 7439602 (-) False LOC110526832
XM_036964011.1 mRNA upstream 60103 7558011 ~ 7564844 (-) True LOC110526835
XM_036964012.1 mRNA upstream 68708 7566616 ~ 7572156 (-) True LOC110526838
XR_005039811.1 mRNA upstream 81489 7579397 ~ 7595763 (-) False LOC110526837
XM_036964013.1 mRNA upstream 82012 7579920 ~ 7595763 (-) False LOC110526837
XR_005039810.1 mRNA upstream 82012 7579920 ~ 7595763 (-) False LOC110526837
TU2282068 other downstream 65653 7389245 ~ 7389568 (-) True G1994075
TU2280111 other downstream 1010992 6431875 ~ 6444229 (-) False LOC118936596
TU2280107 other downstream 1010992 6443346 ~ 6444229 (-) True LOC118936596
TU2280112 other downstream 1025508 6425056 ~ 6429713 (-) False LOC118936596
TU2280100 other downstream 1052326 6397044 ~ 6402895 (-) False LOC118936596
TU2282226 other upstream 153478 7651386 ~ 7665132 (-) True LOC118936603
TU2282281 other upstream 251387 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other upstream 251639 7749547 ~ 7751377 (-) True LOC110526845
TU2282311 other upstream 305936 7803844 ~ 7805854 (-) True LOC118944558
TU2282298 other upstream 373274 7871182 ~ 7873016 (-) True LOC110515105

Expression Profile