RNA id: TU2282226


Basic Information

Item Value
RNA id TU2282226
length 1552
RNA type TUCP
GC content 0.53
exon number 13
gene id LOC118936603
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7647283 ~ 7665132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAGAACAGCACTGTGGATGTTCTAGTAGCCAGAATCACCTGTAGTGATGATGTTCAGCTGACCGTCACGGAGAACCCTGCGGAGGCTTTCTACCTGCGGGGGACGGACCTCATCGCCAAGAGAGGACTGGACTTTGAGTCTCTGCCCCGTGTGGATGATGCTCTGTGGGTCAGGGTGCGCTGCAACAGAACTGGCTCCAGATCAGTGAACGTGTCTGTGGAAGTTTTCATTGAAAATGTGAACGATAATCCTCCAAACTTCGCTCAGAGTCATTACGTTCTCCAGGTGAACGAGctgaCTCCTGTGAACACCAGTGTTGGTCGGATAGAGGCCACAGACATTGACTCTGAGCCACTGTACTATCGTTTAGAGTCAGCCACGAACAGGTATCTACGACTGGAGAATGCCAACACCCCCAACATACTGGTGCAAAACATCATCGACTACGACTCCGTCCAAAAGATCTCCCTGGTCTTACATGTACAGGACACGTATAACGTTTCTGAGTCCGGCGAGCCTTCGTTCACTGCCGTGGTGACCATCACGGTTAACGTGAAGGACGTTGACAACCGTCCACCGTGGTTCCAGCCCTGTGTCAGAACCAACCTGGGGATAGCCAAACTGTGTGTCAGCTCCGGCTACAAGGCAAAGGTCAACCTCACAGAGAAAGAGGACGGTGCTCTATCTCTGGAGCCTGGTCCGTTATACGCCAAGGATGGAGACAGAAACAGGAGTGAGATGATCAACTACAGGATACTTAGAGGGAATGAAGGCAGCATCTTCCAGATCGATGAGGAGACGGGAAACATCTCCATGGCCAAAGCGGCAGACATAGCAGGCCCAATAACCCTCACTGTCCTGgCCTCCCAGGTTACCAACAGGGACCAGTTTGCGGTGACTCAGGTCACCATCGAGGTGCTGAGGAAGAGCAGGAACCCTCCGCGGTTTGAGAAGGAGCGTTATGAAGGTTACATCTACAGTAACTCAGTCCCAGAGACCATGATCCTACGAGACAGAACCTCCAACAGACCCTTCACGGTCAGGGCCAGAGACGAGGACTTTGCCACCggtgTAAACCCAGACATAAGATATGAGGTGCAGTACAGCAGTTATGTCAACGTGACAAACGAAGGATTTGTTCTTCTGAAGAGGATCGTGAAGACAGAGTCCTTCGCTCTCCAGatTCGTGCTATGGACCCGTCTACAGGGGAGTTTGGTACAGCGGCCCTCTCTGTCCTGGTTATACCAGCTGTGGCGGTTCCTTTGCCCTCGGGGGCAGGGTACCGGGCGGGGGACATGGCTCTTCTGGGATTGGTCATGGCAGCCATCTTGGTTCTCTGCTTCATCGTGATTGGCTTCCTGATCTCCCGCCTGAAGAAAGGAGGCGCCAACCTGGATAAGATAACTGAGTGTCTGGCTCCATGTCTGAAGATGACAAGGCCCCAAGGGAGACCCAAAGACACCTTGCAGTACACCAACGATGGCTACCAGGGTACCGAGGGTGATGCCCTGCGCTGCAGACCCAGACGCCCAGAGCCGGTAGACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282238 lncRNA downstream 394 7647283 ~ 7650992 (-) False LOC118936603
TU2282231 lncRNA downstream 394 7647562 ~ 7650992 (-) False LOC118936603
TU2282239 lncRNA downstream 1291 7647283 ~ 7650095 (-) False LOC118936603
TU2282234 lncRNA downstream 1291 7647562 ~ 7650095 (-) False LOC118936603
TU2282235 lncRNA downstream 1291 7647562 ~ 7650095 (-) False LOC118936603
TU2282247 lncRNA upstream 8499 7673631 ~ 7680928 (-) False G1994174
TU2282248 lncRNA upstream 8499 7673631 ~ 7680928 (-) True G1994174
TU2282264 lncRNA upstream 49217 7714349 ~ 7714815 (-) True G1994184
TU2282277 lncRNA upstream 67011 7732143 ~ 7732443 (-) True G1994196
TU2282284 lncRNA upstream 79177 7744309 ~ 7748848 (-) False LOC110526845
XR_005039905.1 mRNA downstream 48955 7597154 ~ 7602431 (-) True LOC118944548
XM_036964014.1 mRNA downstream 54474 7579920 ~ 7596912 (-) True LOC110526837
XR_005039811.1 mRNA downstream 55623 7579397 ~ 7595763 (-) False LOC110526837
XM_036964013.1 mRNA downstream 55623 7579920 ~ 7595763 (-) False LOC110526837
XR_005039810.1 mRNA downstream 55623 7579920 ~ 7595763 (-) False LOC110526837
XM_036963563.1 mRNA upstream 79220 7744352 ~ 7751407 (-) False LOC110526845
XM_036964553.1 mRNA upstream 137511 7802643 ~ 7809933 (-) False LOC118944558
XM_036964195.1 mRNA upstream 198324 7863456 ~ 7870808 (-) False LOC110515105
XM_036964194.1 mRNA upstream 198324 7863456 ~ 7873075 (-) False LOC110515105
XM_036963804.1 mRNA upstream 215130 7880262 ~ 7881911 (-) False LOC118944444
TU2282068 other downstream 261818 7389245 ~ 7389568 (-) True G1994075
TU2280111 other downstream 1207157 6431875 ~ 6444229 (-) False LOC118936596
TU2280107 other downstream 1207157 6443346 ~ 6444229 (-) True LOC118936596
TU2280112 other downstream 1221673 6425056 ~ 6429713 (-) False LOC118936596
TU2280099 other downstream 1240396 6397044 ~ 6410990 (-) False LOC118936596
TU2282281 other upstream 84163 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other upstream 84415 7749547 ~ 7751377 (-) True LOC110526845
TU2282311 other upstream 138712 7803844 ~ 7805854 (-) True LOC118944558
TU2282298 other upstream 206050 7871182 ~ 7873016 (-) True LOC110515105
TU2282504 other upstream 435188 8100320 ~ 8105982 (-) True LOC118944463

Expression Profile