RNA id: TU2282282



Basic Information


Item Value
RNA id TU2282282
length 896
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC110526845
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7744309 ~ 7751407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACAGACTAATGCAGCGGCTCACATTTGTTTTGAGCCAATGTTGTGCATTATGAAATGTAGCTAAAGCTTAGGAGAGTTATGCTATTGCAATGGTTCTTCTTGTGTAAAAACATGCGCTTCAACTGCCTGCTTCCAAAATGAAGATGCGGCTCTAGAGAAAGCTACAGATATACTGTGTATTTCTTGCAGCTAGCTATGACTTATTGCATGTCCTCCCCAATGGTCCACAAGGGCAGGTTATATCTGTATCATACTATTACATCGAGTACAGCTAGATTCATCAAACTCAAACATCAACAGCAAAGAACATTATTCCTCGCTCCAAGGCAAAGGGATGTCCACGGTCTACGtccaagccaagacaagacagtCTGGTGGCCTGGGTTTCGAGGACTGTTCtgtagaggaggagtggaggactccAAGCAGCAGACGCTAGAGGACCTCACTAAGAACATCGGAGGCGGACAGTACAAGAGGATCATAGTGATGGCAGGGGCTGGGATCAGCACACCTAGTGGGATCCCAGACTTCAGGTCCCCTGGCAGTGGTCTCTATGACAACCTCCAGCAGTATAATCTTCCTTACGCAGAAGCCATCTTCGAGATCAACTACTTCCAtcacaaccccaaccctttcTTTGCCCTGGCCAAAGAGCTGTACCCAGGCAACTACCAACCCAACCTCACACACTATTTCATACGTCTGCTTCATGACAAGGGCCAGCTCCTCAGAATGTACACGCAGAATATCGACGGCCTGGAGAGACTGGCAGGAATCCCCCCTGAGAAACTGGTGGAGGCACACGGCTCGTTTGCTACTGCTACCTGTACTGTGTGTCTGAGAGACTACAAGGGGGAGGAGCTACGTGTGAGTCGGTTAACTATCACACCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2282284 lncRNA downstream 699 7744309 ~ 7748848 (-) False LOC110526845
TU2282285 lncRNA downstream 699 7744350 ~ 7748848 (-) False LOC110526845
TU2282286 lncRNA downstream 699 7744620 ~ 7748848 (-) False LOC110526845
TU2282277 lncRNA downstream 17104 7732143 ~ 7732443 (-) True G1994196
TU2282264 lncRNA downstream 34732 7714349 ~ 7714815 (-) True G1994184
TU2282289 lncRNA upstream 286 7751663 ~ 7760585 (-) False G1994202
TU2282291 lncRNA upstream 286 7751663 ~ 7760585 (-) False G1994202
TU2282292 lncRNA upstream 286 7751663 ~ 7760585 (-) False G1994202
TU2282293 lncRNA upstream 286 7751663 ~ 7760585 (-) False G1994202
TU2282294 lncRNA upstream 286 7751663 ~ 7760585 (-) False G1994202
XM_036964044.1 mRNA downstream 85064 7647398 ~ 7664483 (-) False LOC118936603
XR_005039905.1 mRNA downstream 147116 7597154 ~ 7602431 (-) True LOC118944548
XM_036964014.1 mRNA downstream 152635 7579920 ~ 7596912 (-) True LOC110526837
XR_005039810.1 mRNA downstream 153784 7579920 ~ 7595763 (-) False LOC110526837
XM_036964553.1 mRNA upstream 51266 7802643 ~ 7809933 (-) False LOC118944558
XM_036964195.1 mRNA upstream 112079 7863456 ~ 7870808 (-) False LOC110515105
XM_036964194.1 mRNA upstream 112079 7863456 ~ 7873075 (-) False LOC110515105
XM_036963804.1 mRNA upstream 128885 7880262 ~ 7881911 (-) False LOC118944444
XR_002472179.2 mRNA upstream 149718 7901095 ~ 7901646 (-) False LOC110514892
TU2282226 other downstream 84415 7651386 ~ 7665132 (-) True LOC118936603
TU2282068 other downstream 359979 7389245 ~ 7389568 (-) True G1994075
TU2280111 other downstream 1305318 6431875 ~ 6444229 (-) False LOC118936596
TU2280107 other downstream 1305318 6443346 ~ 6444229 (-) True LOC118936596
TU2280112 other downstream 1319834 6425056 ~ 6429713 (-) False LOC118936596
TU2282311 other upstream 52467 7803844 ~ 7805854 (-) True LOC118944558
TU2282298 other upstream 119805 7871182 ~ 7873016 (-) True LOC110515105
TU2282504 other upstream 348943 8100320 ~ 8105982 (-) True LOC118944463
TU2282709 other upstream 938667 8690044 ~ 8691695 (-) False LOC110527031
TU2282717 other upstream 942027 8693404 ~ 8702825 (-) False LOC110527031

Expression Profile