RNA id: XM_036964151.1


Basic Information

Item Value
RNA id XM_036964151.1
length 1531
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110519426
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7943252 ~ 7965019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGACGTTAAAACACGCCTGGATAGACTTTGGTCGGTCCCATGGCTGTCGAGGCTACGGGacgtttttttctttcttcttttctTCTTTGTGTACGTGTGACTAGAGACTCGGGTGTTATGTAACCGCTCAATCTCAGTTTCAATCACACAATGTTTCTCACGCGAATATCAGCGGGCGGTTCCATAGTGATAAGAGCTGCGGCACCGGACAAAGACGCTGGTTTTCCCCTCCAGTTGCAGAAGAGGGAGCGTCCAGATCCGGGGAAGGACCGATCATAAACTCGCGTCATGGctcAGAAGACAGTGCTGATTGTGTACGCCCATCAGAGTGGGGGGTCCTTTAACTCGGCAGCGAAGGATGTTGCCGTGGAAACCCTCAGACAGCAGGGCTACAAGGTCGTTGTGTCTGACCTTTACGCCATGAACTTCAGAGCCTCCGCCACAATGGAGGAtatcacagGTGAGGTGAAGAACCCGGAGCACTTCAAGTACGGAGAGGAGACCATGCATGCCTGGAAGGAGGGTCGACTCAGTGATGACATCATAGCTGAGCAGCGGAAAGTGGAGGCGGCGGAGCTCGTCATCTtccagtTCCCTATGTACTGGTTCAGCGTTCCAGCCATCATGAAGGGCTGGATAGACAGAGTCCTGAGTCAAGGCTTTGCCTTCTCGCTGCAGAAGATGTACAGCAATGGAATATTCAAGGACAAGAAAGCCATGTTGTCGTTCAGCACTGGGTCTATGCAGACTATGTACCGCCCTGACGGCCTCAACGGAGACATTAACGTCACACTGTGGCCCCTACAGAACGGCGTGCTTCACTTCTGTGGGTTCCAGGTGCTAGCCCCCCAGGTGTTCTGGTGTCCGGGACACAGTCCCCCCGCGAATCGGACAGCCATGCTGGATGGCTGGAGGGCCAGGCTGAAGACCCTGCTGGTCGAGCGACCCCTGACCTTTGCCCCCAGCGAGATGTTTGACCTGACCTTCCCCGGGGGCTTCGTGCTGCGGCCGGAGGTCAGGAAGGAGCAGAGCACCCGCCCCCACGGCATCACCACCGGACACCACCTGGGGAAACCCCTCCCCCCTGACAACCAGCTGAAGGCTGATGACCCCTCCCCCTGACAACCAGCTGAAGGCTGATGACCCCTCCCCCTGACAACCAGCTGAAGGCTGATGACCCCTCCCCCCTGACAAAAACTGCTTatttgtaaccagtttataatagcaataaggcacctcggggggggggggggttgcggtaaatggccaatattccacggctaaaggctgtatccaggcactccgcgttgcgtcgtggttaagaacagcccttagccgtcgTAAATTGGCCATAAACCACATCCCCCCCCTCgcgccttattgcttaagtataacattggatggtcaGTTATTATGGTCAAGTCAAATTGACAgagttgttgtgaagatggggagaggtatgtctgTTATAAATAAAAAGATGTTCTGATTTTTTGAAACATCAATAAACTGCACTAGTTGTTCAGACT

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process

KEGG:

id description
K00355 NQO1; NAD(P)H dehydrogenase (quinone)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282363 lncRNA downstream 19023 7912947 ~ 7924229 (-) True G1994243
TU2282367 lncRNA downstream 30888 7887754 ~ 7912364 (-) True G1994247
TU2282390 lncRNA downstream 33751 7908957 ~ 7909501 (-) True G1994268
TU2282360 lncRNA downstream 41685 7900918 ~ 7901567 (-) True LOC110514892
TU2282359 lncRNA downstream 61713 7880294 ~ 7881539 (-) True LOC118944444
TU2282427 lncRNA upstream 6297 7971316 ~ 7977591 (-) False G1994289
TU2282428 lncRNA upstream 7963 7972982 ~ 7977591 (-) False G1994289
TU2282429 lncRNA upstream 9195 7974214 ~ 7977591 (-) False G1994289
TU2282431 lncRNA upstream 10242 7975261 ~ 7977274 (-) True G1994290
TU2282430 lncRNA upstream 10899 7975918 ~ 7977591 (-) True G1994289
XM_036963594.1 mRNA downstream 5423 7926602 ~ 7937829 (-) True LOC118944417
XR_005039694.1 mRNA downstream 13151 7928632 ~ 7930101 (-) False LOC118944418
XR_005039692.1 mRNA downstream 13151 7929042 ~ 7930101 (-) False LOC118944418
XR_005039693.1 mRNA downstream 13151 7929042 ~ 7930101 (-) True LOC118944418
XR_002472179.2 mRNA downstream 41606 7901095 ~ 7901646 (-) False LOC110514892
XM_036964048.1 mRNA upstream 106010 8071029 ~ 8075936 (-) False LOC110518910
XM_036964049.1 mRNA upstream 106010 8071029 ~ 8089566 (-) False LOC110518910
XR_005039823.1 mRNA upstream 114437 8079456 ~ 8080950 (-) True LOC118944485
XM_036964047.1 mRNA upstream 120060 8085079 ~ 8089570 (-) True LOC110518910
XM_036963943.1 mRNA upstream 131955 8096974 ~ 8103779 (-) False LOC118944463
TU2282298 other downstream 70236 7871182 ~ 7873016 (-) True LOC110515105
TU2282311 other downstream 137398 7803844 ~ 7805854 (-) True LOC118944558
TU2282281 other downstream 191875 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other downstream 191875 7749547 ~ 7751377 (-) True LOC110526845
TU2282226 other downstream 278120 7651386 ~ 7665132 (-) True LOC118936603
TU2282504 other upstream 135301 8100320 ~ 8105982 (-) True LOC118944463
TU2282709 other upstream 725025 8690044 ~ 8691695 (-) False LOC110527031
TU2282717 other upstream 728385 8693404 ~ 8702825 (-) False LOC110527031
TU2282715 other upstream 740408 8705427 ~ 8715137 (-) False LOC110527031
TU2282707 other upstream 768917 8733936 ~ 8748744 (-) False LOC110527031

Expression Profile