RNA id: TU2282504


Basic Information

Item Value
RNA id TU2282504
length 1139
RNA type TUCP
GC content 0.55
exon number 3
gene id LOC118944463
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8096974 ~ 8105982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagagaggtttttCGGAGGACAGGACCGTTAGATAATCGCTTTTATTCTCAAATCTGACAATGCGCTTCCAGTTGCCGCCTGCCCCCAACCACCTGCTGAACCAATGTAGATGATGTGGAATTAATACGGATAGGAGAAAAAACACTCCAGATTAGTTCCCGAAAGTGAACGCGCTGTACCTACTCTGTAGGGACGGACCTGTGTTGCGGGGAGACGAGcagttcccactgggcacagacgtcaattcaaagTATATTCCACGTGAAACAACgtcgattcaaccagtgtgtgcccagtgggttgtgttTGGAACAAGACAAGAGCTCTCGGGGTAGCCTAACGGTTCATCACTCCCATTTCGTTTCGTACTTTGTTTTCGCTCCCGGTCAGTTTTTGAATAGGCCCACCATAGTTCCGTAAAGTTGTCTGCGTGCAGCGGAGCGCACGTATGGCTGGTCAATTTGAAGGATGTTGACGCGAAATAATTCGCCTATGATGGAAGTAAATTCACCATAAAGTAAGAGAGGATAAAAACGAGTTGTCAGCGACGGTCCGCGGCCCTCTTCCTGACCAGctgaccatacacacacacacaccgtcccaATGCCACCATGCCCATCATCAGCAACGCTAACCATGACTTCACCAACTACTCGGTCAGCAGTGACAACAGCAGTCTGGACCGCTTCTTCACAGAGatcccagagacagagacagtcaagGGAGTGTACTATCAGCGCGCCCAGCTGCTCCGCAACGACCCCAACGGGGCCTGGCCCTCTGTCGACCACACCCTgcagGCCTTGATCAACGTGGGGGGTAACCGGTACACGTTCCCCTGGACCACCCTGGAGCAGTTCCCTCTCACCCGGCTTGGGCGGCTACGTCTCTGCTCCAGCCCCGAGGACATCGCCAGCCTCTGTGACGACTACGACGAGACCCAGAGGGAGTACTTTTTCGACCGGAACCCCACAGCGTTCCGGGTCATCTTGAACTTCCTGGCGGCCGGGAAGCTCCGCCTCCTGCGAGAGCTGTGCGCGGTGTCACTGCACGATGAGCTGGACTACTGGGGGGTCGACCCCGCCCACATGGAACGCTGCTGCCGCCGACGCATGTTGACACGTGTCGAGGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282484 lncRNA downstream 37810 8062027 ~ 8062510 (-) True G1994322
TU2282480 lncRNA downstream 40183 8058487 ~ 8060137 (-) True G1994319
TU2282482 lncRNA downstream 40282 8059158 ~ 8060038 (-) True G1994320
TU2282450 lncRNA downstream 62231 8008778 ~ 8038089 (-) False G1994302
TU2282445 lncRNA downstream 62231 8026205 ~ 8038089 (-) False G1994302
TU2282510 lncRNA upstream 13230 8119212 ~ 8120344 (-) False G1994334
TU2282512 lncRNA upstream 13230 8119212 ~ 8120344 (-) True G1994334
TU2282535 lncRNA upstream 39057 8145039 ~ 8148488 (-) True G1994341
TU2282550 lncRNA upstream 60743 8166725 ~ 8167145 (-) True G1994355
TU2282554 lncRNA upstream 82552 8188534 ~ 8189659 (-) False G1994359
XM_036964047.1 mRNA downstream 10750 8085079 ~ 8089570 (-) True LOC110518910
XM_036964049.1 mRNA downstream 10754 8071029 ~ 8089566 (-) False LOC110518910
XR_005039823.1 mRNA downstream 19370 8079456 ~ 8080950 (-) True LOC118944485
XM_036964048.1 mRNA downstream 24384 8071029 ~ 8075936 (-) False LOC110518910
XM_036964151.1 mRNA downstream 135301 7943252 ~ 7965019 (-) True LOC110519426
XM_036964180.1 mRNA upstream 23346 8129328 ~ 8143094 (-) False LOC118944505
XM_036964177.1 mRNA upstream 23346 8129328 ~ 8143360 (-) False LOC118944505
XM_036964178.1 mRNA upstream 23346 8129328 ~ 8143363 (-) False LOC118944505
XM_036964176.1 mRNA upstream 23347 8129329 ~ 8143362 (-) True LOC118944505
XM_036964527.1 mRNA upstream 458318 8564300 ~ 8805872 (-) False LOC110527031
TU2282298 other downstream 227304 7871182 ~ 7873016 (-) True LOC110515105
TU2282311 other downstream 294466 7803844 ~ 7805854 (-) True LOC118944558
TU2282281 other downstream 348943 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other downstream 348943 7749547 ~ 7751377 (-) True LOC110526845
TU2282226 other downstream 435188 7651386 ~ 7665132 (-) True LOC118936603
TU2282709 other upstream 584062 8690044 ~ 8691695 (-) False LOC110527031
TU2282717 other upstream 587422 8693404 ~ 8702825 (-) False LOC110527031
TU2282715 other upstream 599445 8705427 ~ 8715137 (-) False LOC110527031
TU2282707 other upstream 627954 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other upstream 627954 8733936 ~ 8748744 (-) True LOC110527031

Expression Profile