RNA id: XM_036964177.1


Basic Information

Item Value
RNA id XM_036964177.1
length 1236
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC118944505
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8129328 ~ 8143363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTTTGAGCCGGTGTTAAACACGCTAACACGGGCGCCAGAGCAAGATTAATCGAATCCCTCACTGACGAGCTACAGACCCCCCAACGAGTAAACAGTGAAGCATGCGCATGATAAATCTCGCGAGTTTACCAAAACGGGAAACGAGCAAAAACCTCCCTATCATATAGAGCCTACTGGTGGAAAGCTGTGCTGTGGTGTCCTATTCGTTGTgagagacatggacaacagacTGGGTCTGGgtgatgaagaggagggagatgtGGGGACCCTGTGGCACTCTTTGGACTGGCTGACGTCCTGTGTGATGGTGGCTGGAGGGGCTCTGCCTTACGCCTCACAGTACCGGCAGATCCTTCGGACCAAGAACACAGACGGCTTCTCTACACGCGTCTGCCTGGTTCTGCTGGTCGCTAACATCCTCCGCATCCTCTTCTGGTTTGGGAAGCAGTTTGAGGTGACTCTGCTCCTGCAGAGTGTGGTGATGATTCTCACCATGCTGGTGATGCTCAACCTCTGCTGCTCTGTACAGAACACCAACCGTATCAGCACCAAACAGCACCACATCACAGatcTGGAACCCCGGTTCTTTTGGAGCTGGGATGGCTTTGAGGACTACCTCATCTTCCTATTGGCCTTCACGCTGCCCTGTGCCTTCACCACCCTTCTCCTCCTGGACTCCTCTCTGTTTGTGGAGTCCCTGGGCTTCCTGGCCGTGCTGACGGAGGCCATGCTGGGGCTACCACAGCTGCTCCAGAACCAACGCAACCACTCCACCACCGGCATGAGTGTGAACATGGTCCTACTGTGGATGGCCGGGGACAGCTTCAAGACGGCCTACTTTGCCCTGAAGGAGAGCCCGCTCCAGTTCCTGTTGTGTGGGTTGACTCAGGTACTGGTGGATCTGGCTATCCTCTATCAAGTGTGTCTCTACAGCCAAGACCCCTGGGACAAACTGgcttaactaaccctaaccctagctatctctaaccctaactatctctaaccctagctaactctaaccctagctaaCTCTAACTAACGCTAACCCTAGCTAACGCTAACCCtagctaactctaaccctaactaactctagctaactctaaccctagctatCACAAGCTAACTCTTTCATTAGCTAACACtagctaactctaaccctagctaactctaaccctagctaattctaaccctagctatcactagctaactctaaccctagctaacactagctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282510 lncRNA downstream 8984 8119212 ~ 8120344 (-) False G1994334
TU2282512 lncRNA downstream 8984 8119212 ~ 8120344 (-) True G1994334
TU2282484 lncRNA downstream 66818 8062027 ~ 8062510 (-) True G1994322
TU2282480 lncRNA downstream 69191 8058487 ~ 8060137 (-) True G1994319
TU2282535 lncRNA upstream 1679 8145039 ~ 8148488 (-) True G1994341
TU2282550 lncRNA upstream 23365 8166725 ~ 8167145 (-) True G1994355
TU2282554 lncRNA upstream 45174 8188534 ~ 8189659 (-) False G1994359
TU2282555 lncRNA upstream 45174 8188534 ~ 8189659 (-) True G1994359
TU2282593 lncRNA upstream 109111 8252471 ~ 8253925 (-) True G1994394
XM_036963943.1 mRNA downstream 25549 8096974 ~ 8103779 (-) False LOC118944463
XM_036964047.1 mRNA downstream 39758 8085079 ~ 8089570 (-) True LOC110518910
XM_036964049.1 mRNA downstream 39762 8071029 ~ 8089566 (-) False LOC110518910
XR_005039823.1 mRNA downstream 48378 8079456 ~ 8080950 (-) True LOC118944485
XM_036964048.1 mRNA downstream 53392 8071029 ~ 8075936 (-) False LOC110518910
XM_036964527.1 mRNA upstream 420940 8564300 ~ 8805872 (-) False LOC110527031
XR_005039910.1 mRNA upstream 428369 8571729 ~ 8573559 (-) True LOC118944554
XR_005039909.1 mRNA upstream 431855 8575215 ~ 8578501 (-) True LOC118944553
XM_036964523.1 mRNA upstream 638299 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA upstream 638299 8781659 ~ 8783606 (-) False LOC118944550
TU2282504 other downstream 23346 8100320 ~ 8105982 (-) True LOC118944463
TU2282298 other downstream 256312 7871182 ~ 7873016 (-) True LOC110515105
TU2282311 other downstream 323474 7803844 ~ 7805854 (-) True LOC118944558
TU2282281 other downstream 377951 7749295 ~ 7751377 (-) False LOC110526845
TU2282709 other upstream 546684 8690044 ~ 8691695 (-) False LOC110527031
TU2282717 other upstream 550044 8693404 ~ 8702825 (-) False LOC110527031
TU2282715 other upstream 562067 8705427 ~ 8715137 (-) False LOC110527031
TU2282707 other upstream 590576 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other upstream 590576 8733936 ~ 8748744 (-) True LOC110527031

Expression Profile