RNA id: TU2282709


Basic Information

Item Value
RNA id TU2282709
length 449
RNA type TUCP
GC content 0.62
exon number 3
gene id LOC110527031
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8564300 ~ 8805872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGATTGGCCGATTTGGAGAGAGCCCAGGCCATGATCTATAAATTGGTGGTCAGCGGGCTGCTGGACGAACACTGCAGTGGGGGCAAGTCCAGACCTGCTGACCCAGAGTGTGAGGAGGGTGTGCAGGGAGAGCAGCAGGCCCAGACCCCCATCACCACCAGCCCCTCTGCCTCCAGCACCACCTCCTTCATGAGCTCCTCTCTGGAGGACACGACCACAGCCACTACacctgttactgacacagagacCGTCCCTGCCTCGGAGTCCCCTGGGGTCATGCCTCTTAGCCTGCTCAGGCAAATGTTCTCAAGCTACCCAACCACCACTCTGCTGCCAACGCGTCGCGCCCAGACGCCCCCGGTGTCTTCTCTCCCCACGTCTCCCTCTGATGAGGTGGGCCGGAGACAGAGCCTCTCCTCCCCTGAGACCCAGACCTCCAGACCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282757 lncRNA downstream 1377 8686490 ~ 8688667 (-) True G1994513
TU2282754 lncRNA downstream 8487 8681352 ~ 8681557 (-) True G1994512
TU2282753 lncRNA downstream 9044 8680801 ~ 8681000 (-) True G1994511
TU2282729 lncRNA downstream 9299 8583662 ~ 8680745 (-) False G1994494
TU2282728 lncRNA downstream 9299 8680237 ~ 8680745 (-) True G1994494
TU2282718 lncRNA upstream 1709 8693404 ~ 8696535 (-) False LOC110527031
TU2282761 lncRNA upstream 6888 8698583 ~ 8700083 (-) False G1994517
TU2282762 lncRNA upstream 6888 8698583 ~ 8699003 (-) True G1994517
TU2282764 lncRNA upstream 7425 8699120 ~ 8700378 (-) True G1994518
TU2282768 lncRNA upstream 18113 8709808 ~ 8710294 (-) True G1994522
XR_005039909.1 mRNA downstream 111543 8575215 ~ 8578501 (-) True LOC118944553
XR_005039910.1 mRNA downstream 116485 8571729 ~ 8573559 (-) True LOC118944554
XM_036964178.1 mRNA downstream 546681 8129328 ~ 8143363 (-) False LOC118944505
XM_036964176.1 mRNA downstream 546682 8129329 ~ 8143362 (-) True LOC118944505
XM_036964177.1 mRNA downstream 546684 8129328 ~ 8143360 (-) False LOC118944505
XM_036964523.1 mRNA upstream 89964 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA upstream 89964 8781659 ~ 8783606 (-) False LOC118944550
XM_036964525.1 mRNA upstream 89964 8781659 ~ 8783606 (-) False LOC118944550
XM_036964526.1 mRNA upstream 89964 8781659 ~ 8783606 (-) True LOC118944550
XR_005039862.1 mRNA upstream 134512 8826207 ~ 8869626 (-) False LOC118936605
TU2282504 other downstream 584062 8100320 ~ 8105982 (-) True LOC118944463
TU2282298 other downstream 817028 7871182 ~ 7873016 (-) True LOC110515105
TU2282311 other downstream 884190 7803844 ~ 7805854 (-) True LOC118944558
TU2282281 other downstream 938667 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other downstream 938667 7749547 ~ 7751377 (-) True LOC110526845
TU2282717 other upstream 1709 8693404 ~ 8702825 (-) False LOC110527031
TU2282715 other upstream 13732 8705427 ~ 8715137 (-) False LOC110527031
TU2282707 other upstream 42241 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other upstream 42241 8733936 ~ 8748744 (-) True LOC110527031
TU2282921 other upstream 401385 9093080 ~ 9108159 (-) True LOC110516734

Expression Profile