RNA id: TU2282715



Basic Information


Item Value
RNA id TU2282715
length 779
RNA type TUCP
GC content 0.59
exon number 6
gene id LOC110527031
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8564300 ~ 8805872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGGGCAACCTGAGAACTCGTCTCCTGGCCCTTCATGTTCTGGAGGCTGTGCTGCCTGCCTGCGAGGCCAGTGTAGAGAACGACCAGATGACACAGGTGGTGGAGCGTCTCTTCTCCCTGCTGGCTGACTGTATGTGGGAAGCTCCCATCGCCCAGGCCAAGCACACCATCCAGATgaaggagaaagagcaggagctGAAACTACAGggtgaggaggaggatgagaaccTTCCCATCCAGGAGGTGTCGTTTGACCCGGAGAAGACTCAGTGTTGTGTGGTGGAGAATGGCCAGGGTCTGACCCACGGCAGCGGGGGGAAGGGATATGGACTGGCCTCTACCGGCATCTCCTCTGGGTGCTACCAGTGGAAGTTCTACATTGTGAAGGAGAACCGTGGGAACGAGGGGACGTGCGTCGGGGTGTCCCGTTGGCCTGTCCATGACTTCAACCACCGCACCACGTCAGACATGTGGCTGTACCGGGCCTACAGCGGGAACCTGTACCACAACGGAGAGCAgaccctcaccctctcctccttcacCCAGGGAGACTACATCACCTGTGTGTTGGACATGGAGGCACGCACCATCTCCTTCGGGAAGAACGGAGAGGAGCCCAAGTTAGCCTTCGAGGACGTGGACGCCACAGAGCTCTACCCCTGTGTCATGTTCTACAGCAGTAACCCTGGAGAGAAGGTGAAGATCTGTGATATGCAGATGCGGGGTACCCCTCGTGACCTCCTGCCCGGTGATCCTATCTGCAGCCCTGTGGCCACAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2282764 lncRNA downstream 5049 8699120 ~ 8700378 (-) True G1994518
TU2282761 lncRNA downstream 5344 8698583 ~ 8700083 (-) False G1994517
TU2282762 lncRNA downstream 6424 8698583 ~ 8699003 (-) True G1994517
TU2282718 lncRNA downstream 8892 8693404 ~ 8696535 (-) False LOC110527031
TU2282757 lncRNA downstream 16760 8686490 ~ 8688667 (-) True G1994513
TU2282769 lncRNA upstream 10923 8726060 ~ 8728462 (-) True G1994523
TU2282772 lncRNA upstream 16663 8731800 ~ 8732460 (-) True G1994525
TU2282775 lncRNA upstream 19754 8734891 ~ 8735391 (-) True G1994526
TU2282783 lncRNA upstream 46419 8761556 ~ 8762170 (-) False G1994534
TU2282784 lncRNA upstream 46419 8761556 ~ 8762008 (-) True G1994534
XR_005039909.1 mRNA downstream 126926 8575215 ~ 8578501 (-) True LOC118944553
XR_005039910.1 mRNA downstream 131868 8571729 ~ 8573559 (-) True LOC118944554
XM_036964178.1 mRNA downstream 562064 8129328 ~ 8143363 (-) False LOC118944505
XM_036964176.1 mRNA downstream 562065 8129329 ~ 8143362 (-) True LOC118944505
XM_036964177.1 mRNA downstream 562067 8129328 ~ 8143360 (-) False LOC118944505
XM_036964523.1 mRNA upstream 66522 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA upstream 66522 8781659 ~ 8783606 (-) False LOC118944550
XM_036964525.1 mRNA upstream 66522 8781659 ~ 8783606 (-) False LOC118944550
XM_036964526.1 mRNA upstream 66522 8781659 ~ 8783606 (-) True LOC118944550
XR_005039862.1 mRNA upstream 111070 8826207 ~ 8869626 (-) False LOC118936605
TU2282717 other downstream 2602 8693404 ~ 8702825 (-) False LOC110527031
TU2282709 other downstream 13732 8690044 ~ 8691695 (-) False LOC110527031
TU2282504 other downstream 599445 8100320 ~ 8105982 (-) True LOC118944463
TU2282298 other downstream 832411 7871182 ~ 7873016 (-) True LOC110515105
TU2282311 other downstream 899573 7803844 ~ 7805854 (-) True LOC118944558
TU2282707 other upstream 18799 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other upstream 18799 8733936 ~ 8748744 (-) True LOC110527031
TU2282921 other upstream 377943 9093080 ~ 9108159 (-) True LOC110516734
TU2282985 other upstream 461901 9177038 ~ 9180705 (-) True G1994674
TU2283141 other upstream 732456 9447593 ~ 9448494 (-) True G1994786

Expression Profile