RNA id: TU2282707



Basic Information


Item Value
RNA id TU2282707
length 658
RNA type TUCP
GC content 0.59
exon number 5
gene id LOC110527031
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8564300 ~ 8805872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTAGAGGAGGCCCTCTCAGGTAACGAGGAGCAGAAACCAGTTGACTGTCCTCTGAGAGCAGACATGAGCGTCCTGGTGGAGCTGGCCCTGGGCTCCACTAAGGAACCCACCAACAGTCTCTGGAGCAACATGCAGGACTACGCCACCAGCAAAgACTGGGACAACGCCTCTCTCTGTAATGAGACCTTATTGGACACCGTGTCCAGGTTTGTCCTGGCTGCTCTGCTGAAGCACACCGGCCTGCTGGGCCAAGCCTGTGGAGAGGGCAGGTACCAGCCTTGTAAGATGCTGGCTGAGGTCTACCGTTGTGTGTACAAGGTCAGGAACCGCCTGCTGGCCTGCAAGAACATGAACGCCGTCCAGACACGCTCGTCTTCCCGCGAGAGGAGGATTTCAGACAATCAGGACTCGCTGGAGATGGACCCCCAGGAGCACTCGTTCACGAGGACCATCGACGAGGAGGCGGAGCTAGAAGAGAGGACGGACCGAGAAAGGGAGGATGTGCATCAGGAgcaagatgaggaagaggaggagagagagcacgaAGTCATGACCGCTGGGAAAATCTTTCAATGTTTCCTCTCAGCGCGGGAGGCGGCGAGGagccgagagagggagagggccagCAGCAGCGCCGGGGGAGGCCTGACCTCAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2282772 lncRNA downstream 1476 8731800 ~ 8732460 (-) True G1994525
TU2282769 lncRNA downstream 5474 8726060 ~ 8728462 (-) True G1994523
TU2282768 lncRNA downstream 23642 8709808 ~ 8710294 (-) True G1994522
TU2282764 lncRNA downstream 33558 8699120 ~ 8700378 (-) True G1994518
TU2282761 lncRNA downstream 33853 8698583 ~ 8700083 (-) False G1994517
TU2282783 lncRNA upstream 12812 8761556 ~ 8762170 (-) False G1994534
TU2282784 lncRNA upstream 12812 8761556 ~ 8762008 (-) True G1994534
TU2282786 lncRNA upstream 17365 8766109 ~ 8767086 (-) True G1994536
TU2282791 lncRNA upstream 42433 8791177 ~ 8791686 (-) True G1994541
TU2282808 lncRNA upstream 77736 8826480 ~ 8832243 (-) False LOC118936605
XR_005039909.1 mRNA downstream 155435 8575215 ~ 8578501 (-) True LOC118944553
XR_005039910.1 mRNA downstream 160377 8571729 ~ 8573559 (-) True LOC118944554
XM_036964178.1 mRNA downstream 590573 8129328 ~ 8143363 (-) False LOC118944505
XM_036964176.1 mRNA downstream 590574 8129329 ~ 8143362 (-) True LOC118944505
XM_036964177.1 mRNA downstream 590576 8129328 ~ 8143360 (-) False LOC118944505
XM_036964523.1 mRNA upstream 32915 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA upstream 32915 8781659 ~ 8783606 (-) False LOC118944550
XM_036964525.1 mRNA upstream 32915 8781659 ~ 8783606 (-) False LOC118944550
XM_036964526.1 mRNA upstream 32915 8781659 ~ 8783606 (-) True LOC118944550
XR_005039862.1 mRNA upstream 77463 8826207 ~ 8869626 (-) False LOC118936605
TU2282715 other downstream 18799 8705427 ~ 8715137 (-) False LOC110527031
TU2282717 other downstream 31111 8693404 ~ 8702825 (-) False LOC110527031
TU2282709 other downstream 42241 8690044 ~ 8691695 (-) False LOC110527031
TU2282504 other downstream 627954 8100320 ~ 8105982 (-) True LOC118944463
TU2282298 other downstream 860920 7871182 ~ 7873016 (-) True LOC110515105
TU2282921 other upstream 344336 9093080 ~ 9108159 (-) True LOC110516734
TU2282985 other upstream 428294 9177038 ~ 9180705 (-) True G1994674
TU2283141 other upstream 698849 9447593 ~ 9448494 (-) True G1994786
TU2283174 other upstream 751972 9500716 ~ 9501653 (-) True G1994812
TU2285182 other upstream 2173272 10922016 ~ 10924533 (-) True G1996632

Expression Profile