RNA id: XM_036964523.1



Basic Information


Item Value
RNA id XM_036964523.1
length 1270
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC118944550
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8781659 ~ 8783606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caggtctgatcccagtggagatggatgatacaggaccaggtctgagcccagtggagatggatgatacaggaccaggtctgatcccagtggagatggatgatacaggaccaggtctgatcccagtggagatggatgatacaggaccaggtctgagcccagtggagatggatgatacaggaccaggtctgatcccagtggagatggatgatacaggaccagATCTGATCCCAGTAGAGATGGATGATACAGGTCTGATCCCAGTAGAGATGGAGgatacaggaccaggtctgatcccagtggagatggaggatacaggaccaggtctgatcccagtggagatggatgatacaggaccaggtctgatcCCAGTAGAGATGGATGATACAGGTCTGATCCCAGTAGAGATGGAGgatacaggaccaggtctgatcccagtggagatggaggatacaggaccaggtctgatcccagtggagatggatgatacaggtccaggtctgatcccagtggagatggatgatacaggaccaggtctgCAGGATGCTTCTCAGGCAGTTGAAACGCCATAAGACCTCTGCACACAAGGGAAATGAGGAAAACGCGGAGTGGATTTCAGTGCCCTGAGACCTCTACAGACACTTGATGCAGCTCCTATTCCAACATCTCCCCTGCCTATCAGCACGGGGCTATTTCATACGCTGTCTCTCTCTAATAAATCCCTCCTCCTGCACGACCACGAGAAGCTTGACATCATGTTCCTAActgaaacctggcatcatcctgTGGTCTACTCAGGCCTAAATGAGCCCCGTCCGTCTACTCCATGACTGTGCTTCTAGTTTATCGGTCTCTGAAGCCTAACCCTTCCTTCACTCTGCGCCACCTCAACCAACATTGTGATTATAAGAGATTTCAAAATCCACCTTAACTCTCCATCATGTCACTCTGCTGCTGGCCAATTTTACAGGCCAATATCCAACCACCCGTTTCTCTCCAAGGTGTTGGAGAAAGGGGTTTCTGTACAGCTCCAGGACCTTCTCAATAAGAACAACCTATATGAGAAGTTCCAGCCAGGTTTCCGACCGGCCCACAGCATTGAAACGGCCCTACTCAGAGTCACCAACGACCTGGCTCTCCCTGTCTCCTGATCCTCCTGGACTTGAGCACAGTGTTTGACGCTGTCGAGAAGCTCGTCCATGTCTTTATCTCCTCAATGCTGAACTACTGCAACACCCTCTTTATCTGGATCCCTGGTAGGAGGCTCCTGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2282786 lncRNA downstream 14573 8766109 ~ 8767086 (-) True G1994536
TU2282783 lncRNA downstream 19489 8761556 ~ 8762170 (-) False G1994534
TU2282784 lncRNA downstream 19651 8761556 ~ 8762008 (-) True G1994534
TU2282775 lncRNA downstream 46268 8734891 ~ 8735391 (-) True G1994526
TU2282772 lncRNA downstream 49199 8731800 ~ 8732460 (-) True G1994525
TU2282791 lncRNA upstream 7571 8791177 ~ 8791686 (-) True G1994541
TU2282808 lncRNA upstream 42874 8826480 ~ 8832243 (-) False LOC118936605
TU2282809 lncRNA upstream 42874 8826480 ~ 8830285 (-) False LOC118936605
TU2282811 lncRNA upstream 42874 8826480 ~ 8828073 (-) False LOC118936605
TU2282815 lncRNA upstream 42874 8826480 ~ 8832243 (-) False LOC118936605
XR_005039909.1 mRNA downstream 203158 8575215 ~ 8578501 (-) True LOC118944553
XR_005039910.1 mRNA downstream 208100 8571729 ~ 8573559 (-) True LOC118944554
XM_036964178.1 mRNA downstream 638296 8129328 ~ 8143363 (-) False LOC118944505
XM_036964176.1 mRNA downstream 638297 8129329 ~ 8143362 (-) True LOC118944505
XM_036964177.1 mRNA downstream 638299 8129328 ~ 8143360 (-) False LOC118944505
XR_005039862.1 mRNA upstream 42601 8826207 ~ 8869626 (-) False LOC118936605
XM_036964331.1 mRNA upstream 51156 8834762 ~ 8869626 (-) False LOC118936605
XM_036964332.1 mRNA upstream 51156 8834762 ~ 8870050 (-) False LOC118936605
XM_036964333.1 mRNA upstream 124325 8907931 ~ 8959715 (-) True LOC110499813
XM_036963694.1 mRNA upstream 242172 9025778 ~ 9036386 (-) False LOC110500985
TU2282707 other downstream 32915 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other downstream 32915 8733936 ~ 8748744 (-) True LOC110527031
TU2282715 other downstream 66522 8705427 ~ 8715137 (-) False LOC110527031
TU2282717 other downstream 78834 8693404 ~ 8702825 (-) False LOC110527031
TU2282709 other downstream 89964 8690044 ~ 8691695 (-) False LOC110527031
TU2282921 other upstream 309474 9093080 ~ 9108159 (-) True LOC110516734
TU2282985 other upstream 393432 9177038 ~ 9180705 (-) True G1994674
TU2283141 other upstream 663987 9447593 ~ 9448494 (-) True G1994786
TU2283174 other upstream 717110 9500716 ~ 9501653 (-) True G1994812
TU2285182 other upstream 2138410 10922016 ~ 10924533 (-) True G1996632

Expression Profile