RNA id: TU2282808


Basic Information

Item Value
RNA id TU2282808
length 1105
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC118936605
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8826207 ~ 8870050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgtatcagCCAAACACTACAATACACTGGTCCTTTTACTCCTAGTCTGGTACCTTTTAGTCTGGGTCCTTCTAGTCAGGTCATTTTAGTCCTAGTCTGGTCATTTTAGTCCTAGTCTGGTCCTTTTAGTCCTAGTCTTGTCCTTTTAGTCCTAGTCTGGTCCCTTTTAGTCCTAGTCTGGTCCTTTTAGTCCTAGTCTTGTCCTTTTAGTCCTAGTCTGGGTCCTTTTAGTCCTAGTCTGGTCCTTTTAGTCCTAGTCTGGTCCCTTTTAGTCCTAGTATGGTCCTTTTAGTCCTAGTCTGGCCCCTTTTAGTCCTAGTCTGGTCCCTTTTAGTCCTAGTCTGGTCCTTTTAGTCCTAGTCTGGTCCTTTTAGTCCTAGTCTGGTCCTGATCTCTTTATAAGACTGTTTTAGCTCCTATGTTTGTTGTCTTTGTCATGATAGCCCAAAGGCTTTTCATCCTATCTATGTCATGACAGCCCAAAGGCTTTTCATCCTATCTATGTCATGACAGCCCAAAGGCTTTTCATCCTATCTATGTCATGACAGCACAAAGGCTTTTCATCCTATCTATGTCATGACAGCCCAAAGGCTTTTCATCCTATCTATGTCATGACAGCCCAAAGGCTTTTCATCCTATCTATGTCATGACAGCCCAAAGGCTTTTCATCCTATCTATGTCATGACAGCCCAAAGGCTTTTCATCCTATCTATGTCCTGCTGTTTTCTGCTGTGGTTTAGCCGTTAAACCCATGCCAGGCCCTGGTGCGCAGACAGTCTGTCATTAATCTGGAGAACTTCAGGAGACAGTACGCACAACGCAGATGGAAGATGTCTATCAGGATTGTGTCTCTGTGTAACCACCTGACCAGGATGATGAGAAGAGGgcaggaacaacaacaacaacaacaggaccAGAGGAGCTGTGACAGCGACAACGAGGAAGAGACCAGGAAGACGAGACTACAGACCAGGAAGAGGAGTAACACTTCCTGAAGACAACAACCAATCAAAACACCAccattcctccattccacttCCTGAAGACAACAACCAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282791 lncRNA downstream 34794 8791177 ~ 8791686 (-) True G1994541
TU2282786 lncRNA downstream 59394 8766109 ~ 8767086 (-) True G1994536
TU2282783 lncRNA downstream 64310 8761556 ~ 8762170 (-) False G1994534
TU2282784 lncRNA downstream 64472 8761556 ~ 8762008 (-) True G1994534
TU2282775 lncRNA downstream 91089 8734891 ~ 8735391 (-) True G1994526
TU2282826 lncRNA upstream 35226 8867469 ~ 8868005 (-) True G1994562
TU2282827 lncRNA upstream 38412 8870655 ~ 8870930 (-) True G1994563
TU2282848 lncRNA upstream 65767 8898010 ~ 8898445 (-) True G1994574
TU2282865 lncRNA upstream 104146 8936389 ~ 8937315 (-) True G1994589
TU2282896 lncRNA upstream 176252 9008495 ~ 9010657 (-) True G1994617
XM_036964527.1 mRNA downstream 20608 8564300 ~ 8805872 (-) False LOC110527031
XM_036964523.1 mRNA downstream 42874 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA downstream 42874 8781659 ~ 8783606 (-) False LOC118944550
XM_036964525.1 mRNA downstream 42874 8781659 ~ 8783606 (-) False LOC118944550
XM_036964526.1 mRNA downstream 42874 8781659 ~ 8783606 (-) True LOC118944550
XM_036964331.1 mRNA upstream 2519 8834762 ~ 8869626 (-) False LOC118936605
XM_036964332.1 mRNA upstream 2519 8834762 ~ 8870050 (-) False LOC118936605
XM_036964333.1 mRNA upstream 75688 8907931 ~ 8959715 (-) True LOC110499813
XM_036963694.1 mRNA upstream 193535 9025778 ~ 9036386 (-) False LOC110500985
XM_036963696.1 mRNA upstream 193535 9025778 ~ 9036386 (-) False LOC110500985
TU2282707 other downstream 77736 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other downstream 77736 8733936 ~ 8748744 (-) True LOC110527031
TU2282715 other downstream 111343 8705427 ~ 8715137 (-) False LOC110527031
TU2282717 other downstream 123655 8693404 ~ 8702825 (-) False LOC110527031
TU2282709 other downstream 134785 8690044 ~ 8691695 (-) False LOC110527031
TU2282921 other upstream 260837 9093080 ~ 9108159 (-) True LOC110516734
TU2282985 other upstream 344795 9177038 ~ 9180705 (-) True G1994674
TU2283141 other upstream 615350 9447593 ~ 9448494 (-) True G1994786
TU2283174 other upstream 668473 9500716 ~ 9501653 (-) True G1994812
TU2285182 other upstream 2089773 10922016 ~ 10924533 (-) True G1996632

Expression Profile